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Comment: C: How to use Kallisto | bustools workflow for fastq files where each sample has tw
4.6 years ago by Farah ▴ 80
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1.2k
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Comment: C: Is "Attribute Circle Layout" of a protein-protein network standard and acceptabl
4.6 years ago by Farah ▴ 80
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1.2k
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Comment: C: Is "Attribute Circle Layout" of a protein-protein network standard and acceptabl
4.6 years ago by Farah ▴ 80
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2.9k
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Comment: C: Converting Ensembl gene IDs to Entrez IDs for indexing gene set collections for
4.7 years ago by Farah ▴ 80
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2.9k
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Comment: C: Converting Ensembl gene IDs to Entrez IDs for indexing gene set collections for
4.7 years ago by Farah ▴ 80
0
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1
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2.9k
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Comment: C: Converting Ensembl gene IDs to Entrez IDs for indexing gene set collections for
4.7 years ago by Farah ▴ 80
2
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7
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2.9k
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Converting Ensembl gene IDs to Entrez IDs for indexing gene set collections for doing "Ensemble of Gene Set Enrichment Analyses"
RNA-Seq edgeR EGSEA limma biomaRt
updated 4.7 years ago by 43k • written 4.7 years ago by ▴ 80
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1.8k
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Comment: C: Ensemble of Gene Set Enrichment Analyses (EGSEA) for count matrix generated by D
4.7 years ago by Farah ▴ 80
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1
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1.8k
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Comment: C: Ensemble of Gene Set Enrichment Analyses (EGSEA) for count matrix generated by D
4.7 years ago by Farah ▴ 80
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6.2k
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Comment: C: Error in tximport: all(file.exists(files)) is not TRUE
4.7 years ago by Farah ▴ 80
1
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2
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6.2k
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Error in tximport: all(file.exists(files)) is not TRUE
tximport DESeq2
updated 4.7 years ago by 35k • written 4.7 years ago by ▴ 80
0
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0
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3.0k
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Comment: C: How to change my colnames(count.table) as exactly similar to my rownames(meta)?
4.7 years ago by Farah ▴ 80
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0
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3.0k
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Comment: C: How to change my colnames(count.table) as exactly similar to my rownames(meta)?
4.7 years ago by Farah ▴ 80
0
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1
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3.0k
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Comment: C: How to change my colnames(count.table) as exactly similar to my rownames(meta)?
4.7 years ago by Farah ▴ 80
5
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9
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3.0k
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How to change my colnames(count.table) as exactly similar to my rownames(meta)?
RNA-Seq Kallisto DESeq2 R tximport
updated 4.7 years ago by 82k • written 4.8 years ago by ▴ 80
0
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0
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1.9k
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Comment: C: How to quantify the RNA-seq reads using Kallisto?
4.8 years ago by Farah ▴ 80
0
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0
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12k
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Comment: C: Build a Kallisto transcriptome index
4.8 years ago by Farah ▴ 80
0
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1
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1.9k
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Comment: C: How to quantify the RNA-seq reads using Kallisto?
updated 4.8 years ago by 43k • written 4.8 years ago by ▴ 80
0
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1
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2.7k
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Comment: C: How to install SortMeRNA tool on my university HPC cluster?
updated 4.8 years ago by 43k • written 4.9 years ago by ▴ 80
4
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4
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1.9k
views
How to quantify the RNA-seq reads using Kallisto?
RNA-Seq Kallisto
updated 4.8 years ago by 43k • written 4.8 years ago by ▴ 80
0
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1
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12k
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Comment: C: Build a Kallisto transcriptome index
4.8 years ago by Farah ▴ 80
0
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0
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46k
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Comment: C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
4.8 years ago by Farah ▴ 80
1
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1
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46k
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Comment: C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
4.8 years ago by Farah ▴ 80
0
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1
reply
46k
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Comment: C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
4.8 years ago by Farah ▴ 80
0
votes
1
reply
12k
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Comment: C: Build a Kallisto transcriptome index
4.8 years ago by Farah ▴ 80
0
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0
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12k
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Comment: C: Build a Kallisto transcriptome index
4.8 years ago by Farah ▴ 80
0
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1
reply
46k
views
Comment: C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
updated 4.8 years ago by 16k • written 4.8 years ago by ▴ 80
3
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9
replies
12k
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Build a Kallisto transcriptome index
Kallisto RNA-Seq pseudo-alignment
updated 4.8 years ago by ▴ 700 • written 4.8 years ago by ▴ 80
0
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0
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1.7k
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Comment: C: Running Trimmomatic for bulk RNAseq data
4.8 years ago by Farah ▴ 80
0
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1
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1.7k
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Comment: C: Running Trimmomatic for bulk RNAseq data
4.8 years ago by Farah ▴ 80
0
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1
reply
1.7k
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Comment: C: Running Trimmomatic for bulk RNAseq data
4.8 years ago by Farah ▴ 80
0
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1
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1.7k
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Comment: C: Running Trimmomatic for bulk RNAseq data
4.8 years ago by Farah ▴ 80
0
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0
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1.7k
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Comment: C: Running Trimmomatic for bulk RNAseq data
updated 4.8 years ago by 141k • written 4.8 years ago by ▴ 80
0
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1
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1.7k
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Comment: C: Running Trimmomatic for bulk RNAseq data
updated 4.8 years ago by 141k • written 4.8 years ago by ▴ 80
0
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1
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1.7k
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Comment: A: Running Trimmomatic for bulk RNAseq data
4.8 years ago by Farah ▴ 80
4
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13
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1.7k
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Running Trimmomatic for bulk RNAseq data
RNA-Seq Trimmomatic FastQC
4.8 years ago by Farah ▴ 80
0
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0
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2.8k
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Comment: C: Running SortMeRNA for bulk RNAseq data
4.8 years ago by Farah ▴ 80
0
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0
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6.6k
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Comment: C: How to download RNA-seq dataset (fastq.gz files) from GEO and SRA databases?
4.8 years ago by Farah ▴ 80
0
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0
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2.7k
views
Comment: C: How to install SortMeRNA tool on my university HPC cluster?
4.8 years ago by Farah ▴ 80
1
vote
4
replies
2.8k
views
Running SortMeRNA for bulk RNAseq data
sortmerna RNA-Seq
updated 10 months ago by 43k • written 4.8 years ago by ▴ 80
3
votes
3
replies
6.6k
views
How to download RNA-seq dataset (fastq.gz files) from GEO and SRA databases?
fastq SRA RNA-Seq GEO
updated 13 months ago by 43k • written 4.8 years ago by ▴ 80
0
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2
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1.2k
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How to create plots correlating mRNA expression with PAM50 and my bait protein's expression using cBioPortal database?
cBioPortal PAM50 assay mRNA expression
4.8 years ago by Farah ▴ 80
0
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0
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1.2k
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Answer: A: How to create plots correlating mRNA expression with PAM50 and my bait protein's
4.8 years ago by Farah ▴ 80
0
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0
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2.7k
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Comment: C: How to install SortMeRNA tool on my university HPC cluster?
4.9 years ago by Farah ▴ 80
0
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1
reply
2.7k
views
Comment: C: How to install SortMeRNA tool on my university HPC cluster?
4.9 years ago by Farah ▴ 80
4
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9
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2.7k
views
How to install SortMeRNA tool on my university HPC cluster?
RNA-Seq HPC Cluster cluster computing
updated 4.9 years ago by ★ 2.2k • written 4.9 years ago by ▴ 80
0
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0
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2.4k
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Comment: C: How to mount my data into docker container through -v command?
5.0 years ago by Farah ▴ 80
0
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0
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2.4k
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Comment: C: How to mount my data into docker container through -v command?
5.0 years ago by Farah ▴ 80
0
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0
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2.4k
views
Comment: C: How to mount my data into docker container through -v command?
5.0 years ago by Farah ▴ 80
0
votes
6
replies
2.4k
views
How to mount my data into docker container through -v command?
rna-seq docker container bash scripting
5.0 years ago by Farah ▴ 80
103 results • Page 2 of 3
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