User: dweeks.pitt

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dweeks.pitt40
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United States
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3 years, 10 months ago
Joined:
6 years, 8 months ago
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Posts by dweeks.pitt

<prev • 7 results • page 1 of 1 • next >
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Answer: A: How to convert IMPUTE2 to VCF format
... While qctool will convert to VCF format without a sample file, this is only useful if you do not need to know the sample IDs, as when one does this, it generates dummy IDs in the VCF like this: sample_1 sample_2 sample_3 sample_4 ... In all the work we do, we need to know ...
written 3.9 years ago by dweeks.pitt40
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How to figure out which genotyping chips a SNP is on?
... Is there a database that would answer this type of query: Given an rs ID of a SNP, which commercial SNP chips is this SNP on? I found this one, the SNAP database at the Broad: https://www.broadinstitute.org/mpg/snap/ldsearch.php which answers the question if the query SNP is in HapMap3 or 1000 ...
snp chip illumina snp genotyping chip affymetrix written 4.5 years ago by dweeks.pitt40
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Answer: A: Vcftools Can'T Create Ped Map File Due To Ulimit Of Allowed Open Files.
... The Mega2 program can convert from VCF format to PLINK format. See: http://watson.hgen.pitt.edu/docs/conversions/vcf_or_bcf_plink.html ...
written 6.1 years ago by dweeks.pitt40
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Answer: A: Convert .Pre Files To .Ped And .Map Files For Plink
... The Mega2 program can convert from pre-makeped LINKAGE format to PLINK format. See: http://watson.hgen.pitt.edu/docs/conversions/linkage_plink.html ...
written 6.1 years ago by dweeks.pitt40
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Answer: A: How To Convert Vcf File To Plink Ped Format?
... The Mega2 program can convert from VCF to PLINK format. See:  http://watson.hgen.pitt.edu/docs/conversions/vcf_or_bcf_plink.html ...
written 6.1 years ago by dweeks.pitt40
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Answer: A: Convert Plink .Ped File To Pbat .Ped File
... The free Mega2 program will convert from PLINK format to FBAT format. ...
written 6.7 years ago by dweeks.pitt40
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Answer: A: Plink Map And Ped To Merlin Map And Pre - File Conversion Issues
... The free Mega2 program can convert from PLINK-format to Merlin-format. See: http://watson.hgen.pitt.edu/docs/conversions/plink_merlin.html ...
written 6.7 years ago by dweeks.pitt40 • updated 9 months ago by RamRS30k

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