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0
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621
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panel of normals for mutect2
mutect2 gatk NGS PoN somatic
2.1 years ago by lait ▴ 170
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1
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1.1k
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an efficient way to annotate mutations from vcf files using multiple annotation files
vep ensembl cadd clinvar lovd
updated 2.8 years ago by 20 • written 3.5 years ago by ▴ 170
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0
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750
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VCF files never get annotated with PG tag for CalculateGenotypePosteriors
GATK CalculateGenotypePosteriors denovo Genotype
updated 3.2 years ago by 20 • written 3.4 years ago by ▴ 170
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0
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1.4k
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Comment: C: error bcftools isec
3.5 years ago by lait ▴ 170
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2
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1.4k
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error bcftools isec
bcftools vcf tabix
updated 3.5 years ago by ★ 14k • written 3.5 years ago by ▴ 170
7
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3
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1.1k
views
number of cycles, Nextseq500, for whole exoems equencing, which option is more efficient?
hiseq nextseq cycles reads-length
updated 3.8 years ago by ★ 1.1k • written 3.8 years ago by ▴ 170
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1
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820
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Comment: C: EXCAVATOR shows 1 deletion which is not TRUE in IGV
4.1 years ago by lait ▴ 170
2
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3
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820
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EXCAVATOR shows 1 deletion which is not TRUE in IGV
excavator igv wes exome cnv
4.1 years ago by lait ▴ 170
1
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1
reply
570
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bionano's raw data of images, safe to delete?
bionano molecules rawdata
4.1 years ago by lait ▴ 170
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1
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1.2k
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Comment: C: bionano hybrid scaffold
4.1 years ago by lait ▴ 170
2
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4
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1.2k
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bionano hybrid scaffold
WES bionano optical mapping illumina
updated 4.1 years ago by 47k • written 4.1 years ago by ▴ 170
8
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4
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1.8k
views
tool to detect large deletions
deletions IGV wes
updated 4.2 years ago by ▴ 410 • written 4.2 years ago by ▴ 170
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0
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1.8k
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Comment: C: tool to detect large deletions
4.2 years ago by lait ▴ 170
1
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0
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859
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putative mosaic mutations
mosaic de novo wes sequencing
4.3 years ago by lait ▴ 170
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2
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2.4k
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Comment: C: find coverage of specific exomes from a bam file
4.6 years ago by lait ▴ 170
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0
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2.4k
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Comment: C: find coverage of specific exomes from a bam file
4.6 years ago by lait ▴ 170
0
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2
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2.4k
views
Comment: C: find coverage of specific exomes from a bam file
4.6 years ago by lait ▴ 170
0
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1
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2.4k
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Comment: C: find coverage of specific exomes from a bam file
4.6 years ago by lait ▴ 170
0
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1
reply
2.4k
views
Comment: C: find coverage of specific exomes from a bam file
4.6 years ago by lait ▴ 170
0
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1
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2.4k
views
Comment: C: find coverage of specific exomes from a bam file
4.6 years ago by lait ▴ 170
6
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14
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2.4k
views
find coverage of specific exomes from a bam file
coverage bedtools genomecov bam bed
updated 4.6 years ago by 154k • written 4.6 years ago by ▴ 170
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1
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3.1k
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Comment: C: Course: Practical GWAS using Linux and R. 23-27 October 2017, Berlin (Germany)
4.6 years ago by lait ▴ 170
8
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7
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2.3k
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snps/indels with individual genotypes from 1000 genomes ftp site
1000 genomes ftp genotypes vcf
updated 11 months ago by • 0 • written 4.8 years ago by ▴ 170
3
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7
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3.8k
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most efficient way to read from large vcf files
vcf
4.8 years ago by lait ▴ 170
0
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0
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823
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how to get genomic position from protein pdb ID+AA residue position within the protein
pdb pisite protein protein-protein interaction
4.8 years ago by lait ▴ 170
0
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0
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2.3k
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Comment: C: is this a potential mosaicism?
4.8 years ago by lait ▴ 170
0
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0
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2.3k
views
Comment: C: is this a potential mosaicism?
4.8 years ago by lait ▴ 170
9
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15
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2.3k
views
is this a potential mosaicism?
mosaicism denovo IGV BAM alignment
4.8 years ago by lait ▴ 170
0
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1
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2.3k
views
Comment: C: is this a potential mosaicism?
4.8 years ago by lait ▴ 170
0
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1
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2.3k
views
Comment: C: is this a potential mosaicism?
4.8 years ago by lait ▴ 170
0
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0
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2.3k
views
Comment: C: is this a potential mosaicism?
4.8 years ago by lait ▴ 170
1
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1
reply
2.3k
views
Comment: C: is this a potential mosaicism?
4.8 years ago by lait ▴ 170
2
votes
1
reply
1.1k
views
haplotype phasing in duos
haplotype phasing trios duos RNA-Seq
updated 4.9 years ago by ▴ 60 • written 5.1 years ago by ▴ 170
0
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0
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864
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processing parent-child duos
duos ngs exome sequencing denovo
5.1 years ago by lait ▴ 170
0
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1
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1.3k
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Comment: C: low coverage & BAF plots have three peaks
5.2 years ago by lait ▴ 170
0
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1
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1.3k
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Comment: C: low coverage & BAF plots have three peaks
5.2 years ago by lait ▴ 170
0
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0
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1.7k
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Comment: C: sample mixing when demultiplexing
5.2 years ago by lait ▴ 170
0
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1
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1.7k
views
Comment: C: sample mixing when demultiplexing
5.2 years ago by lait ▴ 170
4
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4
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1.7k
views
sample mixing when demultiplexing
demultiplex WES human samples NGS BAM
5.2 years ago by lait ▴ 170
0
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4
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1.3k
views
low coverage & BAF plots have three peaks
b-allele frequency low coverage WES human samples
5.2 years ago by lait ▴ 170
1
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1
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2.1k
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Comment: C: Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial commu
5.3 years ago by lait ▴ 170
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0
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2.8k
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Comment: C: how to distinguish mosaicism out of germline de novo mutations
5.3 years ago by lait ▴ 170
5
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1
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1.3k
views
identifying TP53 germline mutations which are also in tumor cells.
germline tp53 somatic varscan mutect
updated 5.3 years ago by ▴ 600 • written 5.3 years ago by ▴ 170
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1
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2.8k
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Comment: C: how to distinguish mosaicism out of germline de novo mutations
5.3 years ago by lait ▴ 170
3
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5
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2.8k
views
how to distinguish mosaicism out of germline de novo mutations
de novo mutations mosaicism WES allele frequency
updated 5.3 years ago by ★ 1.6k • written 5.3 years ago by ▴ 170
0
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1
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1.9k
views
Comment: C: demultiplexing with same indices across different lanes
5.3 years ago by lait ▴ 170
0
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1
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1.9k
views
Comment: C: demultiplexing with same indices across different lanes
5.3 years ago by lait ▴ 170
0
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1
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1.9k
views
Comment: C: demultiplexing with same indices across different lanes
5.3 years ago by lait ▴ 170
1
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10
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1.9k
views
demultiplexing with same indices across different lanes
demultiplex multiplex index lane bcl2fastq
5.3 years ago by lait ▴ 170
0
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1
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1.9k
views
Comment: C: demultiplexing with same indices across different lanes
5.3 years ago by lait ▴ 170
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