Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : questions
1
vote
1
reply
254
views
switching from illumination to NEB prep kits
NEB WGS WES illumina
updated 3 months ago by 134k • written 3 months ago by ▴ 180
0
votes
0
replies
672
views
panel of normals for mutect2
mutect2 gatk NGS PoN somatic
2.4 years ago by lait ▴ 180
0
votes
1
reply
1.2k
views
an efficient way to annotate mutations from vcf files using multiple annotation files
vep ensembl cadd clinvar lovd
updated 3.1 years ago by 20 • written 3.8 years ago by ▴ 180
0
votes
0
replies
798
views
VCF files never get annotated with PG tag for CalculateGenotypePosteriors
GATK CalculateGenotypePosteriors denovo Genotype
updated 3.5 years ago by 20 • written 3.7 years ago by ▴ 180
1
vote
2
replies
1.5k
views
error bcftools isec
bcftools vcf tabix
updated 3.8 years ago by ★ 15k • written 3.8 years ago by ▴ 180
7
votes
3
replies
1.1k
views
number of cycles, Nextseq500, for whole exoems equencing, which option is more efficient?
hiseq nextseq cycles reads-length
updated 4.1 years ago by ★ 1.1k • written 4.1 years ago by ▴ 180
2
votes
3
replies
873
views
EXCAVATOR shows 1 deletion which is not TRUE in IGV
excavator igv wes exome cnv
4.4 years ago by lait ▴ 180
1
vote
1
reply
617
views
bionano's raw data of images, safe to delete?
bionano molecules rawdata
4.4 years ago by lait ▴ 180
2
votes
4
replies
1.2k
views
bionano hybrid scaffold
WES bionano optical mapping illumina
updated 4.4 years ago by 47k • written 4.4 years ago by ▴ 180
8
votes
4
replies
1.9k
views
tool to detect large deletions
deletions IGV wes
updated 4.5 years ago by ▴ 450 • written 4.5 years ago by ▴ 180
1
vote
0
replies
901
views
putative mosaic mutations
mosaic de novo wes sequencing
4.6 years ago by lait ▴ 180
6
votes
14
replies
2.6k
views
find coverage of specific exomes from a bam file
coverage bedtools genomecov bam bed
updated 4.9 years ago by 157k • written 4.9 years ago by ▴ 180
8
votes
7
replies
2.5k
views
snps/indels with individual genotypes from 1000 genomes ftp site
1000 genomes ftp genotypes vcf
updated 14 months ago by • 0 • written 5.1 years ago by ▴ 180
4
votes
7
replies
4.1k
views
most efficient way to read from large vcf files
vcf
5.1 years ago by lait ▴ 180
0
votes
0
replies
860
views
how to get genomic position from protein pdb ID+AA residue position within the protein
pdb pisite protein protein-protein interaction
5.1 years ago by lait ▴ 180
9
votes
15
replies
2.5k
views
is this a potential mosaicism?
mosaicism denovo IGV BAM alignment
5.1 years ago by lait ▴ 180
2
votes
1
reply
1.2k
views
haplotype phasing in duos
haplotype phasing trios duos RNA-Seq
updated 5.2 years ago by ▴ 60 • written 5.4 years ago by ▴ 180
0
votes
0
replies
904
views
processing parent-child duos
duos ngs exome sequencing denovo
5.4 years ago by lait ▴ 180
4
votes
4
replies
1.8k
views
sample mixing when demultiplexing
demultiplex WES human samples NGS BAM
5.5 years ago by lait ▴ 180
0
votes
4
replies
1.4k
views
low coverage & BAF plots have three peaks
b-allele frequency low coverage WES human samples
5.5 years ago by lait ▴ 180
5
votes
1
reply
1.3k
views
identifying TP53 germline mutations which are also in tumor cells.
germline tp53 somatic varscan mutect
updated 5.6 years ago by ▴ 600 • written 5.6 years ago by ▴ 180
3
votes
5
replies
2.9k
views
how to distinguish mosaicism out of germline de novo mutations
de novo mutations mosaicism WES allele frequency
updated 5.6 years ago by ★ 1.6k • written 5.6 years ago by ▴ 180
1
vote
10
replies
2.1k
views
demultiplexing with same indices across different lanes
demultiplex multiplex index lane bcl2fastq
5.6 years ago by lait ▴ 180
0
votes
5
replies
1.4k
views
detecting mutations in cancer samples belonging to the same cancer type
cancer tumor wes pipeline ngs
updated 5.7 years ago by ▴ 540 • written 5.7 years ago by ▴ 180
0
votes
0
replies
1.4k
views
phasing variants produced by varscan
gatk phasing varscan variants trio analysis
5.8 years ago by lait ▴ 180
0
votes
0
replies
1.4k
views
does varscan2 trio mode perform joint genotyoing?
varscan variant germline trio joint genotyping
5.9 years ago by lait ▴ 180
2
votes
1
reply
1.6k
views
how are alleles represented in the sequenced reads?
NGS alleles SNP
updated 5.9 years ago by 13k • written 5.9 years ago by ▴ 180
1
vote
2
replies
2.0k
views
Is this a good workflow to find denovo mutations in trios?
denovo phasing whole exome sequencing trios
5.9 years ago by lait ▴ 180
14
votes
11
replies
3.0k
views
phasing variants to find de novos
phasing de novo NGS whole exome sequencing
updated 5.9 years ago by ★ 1.6k • written 5.9 years ago by ▴ 180
3
votes
2
replies
4.2k
views
mutations' effect on secondary structure
secondary structure mutation checmical properties
updated 6.7 years ago by ▴ 590 • written 7.5 years ago by ▴ 180
0
votes
3
replies
1.6k
views
strange output when trying to get consensus from a sorted bam file
bam consensus NGS samtools
7.1 years ago by lait ▴ 180
1
vote
7
replies
2.8k
views
get a consensus out of a Sorted bam file
bam sam NGS BWA
7.1 years ago by lait ▴ 180
0
votes
2
replies
1.6k
views
where to find Escherichia coli ST131 genome
NGS genome e.coli
updated 7.1 years ago by 134k • written 7.1 years ago by ▴ 180
1
vote
4
replies
1.9k
views
tools for gene assembly and quality check for sanger sequencing
sanger sequencing fastq gene Assembly
updated 7.3 years ago by ▴ 10 • written 7.3 years ago by ▴ 180
10
votes
6
replies
2.7k
views
which language to use for such a bioinformatics web services infrastructure?
web-services java
updated 6 months ago by 40k • written 8.3 years ago by ▴ 180
0
votes
3
replies
1.9k
views
consistency in sequence alignment?
alignment sequence
updated 7 months ago by 40k • written 8.4 years ago by ▴ 180
4
votes
2
replies
2.6k
views
objective function of the needleman-wunsch algorithm
sequence-alignment needleman-wunsch
updated 15 months ago by 40k • written 8.4 years ago by ▴ 180
9
votes
4
replies
4.5k
views
java script multiple sequence alignment viewer
sequence javascript alignment
updated 22 months ago by 40k • written 9.2 years ago by ▴ 180
4
votes
3
replies
6.8k
views
Difference Between Pfam And Prosite ?
protein
updated 23 months ago by 40k • written 9.6 years ago by ▴ 180
39 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6