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questions
0
votes
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replies
304
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VG Giraffe Mapping to a Single Connected Component
graph
vg
pangenome
giraffe
10 months ago by
jdru
▴ 10
0
votes
0
replies
347
views
Where to find Y Chromosome Haplogroup Sequences
chromosome-Y
haplogroup
updated 15 months ago by
Ram
43k • written 18 months ago by
jdru
▴ 10
0
votes
0
replies
319
views
HSD to FASTA Converter?
Haplogrep
FASTA
HSD
haplogroup
2.0 years ago by
jdru
▴ 10
0
votes
0
replies
376
views
VG Giraffe does not map reads < 39 bases
vg
mapping
graph
variation
giraffe
2.2 years ago by
jdru
▴ 10
1
vote
2
replies
951
views
Constructing a vg graph from MSA with a large number of sequences
graph
msa
variation
vg
2.2 years ago by
jdru
▴ 10
0
votes
0
replies
414
views
Find which paths traverse a given node/edge in a vg graph
graph
paths
variation
vg
2.4 years ago by
jdru
▴ 10
0
votes
0
replies
385
views
How does vg construct -M runtime scale with number of sequences?
sequence
multiple
alignment
vg
2.4 years ago by
jdru
▴ 10
1
vote
3
replies
786
views
Runtime of muscle -refine
multiple
sequence
msa
alignment
muscle
updated 2.4 years ago by
Michael
54k • written 2.4 years ago by
jdru
▴ 10
0
votes
1
reply
587
views
Bam File Average Coverage Depth Changes After Fixmate
samtools
bash
coverage
fixmate
BAM
updated 2.4 years ago by
Pierre Lindenbaum
160k • written 2.4 years ago by
jdru
▴ 10
0
votes
0
replies
448
views
Selecting Representative Sequences from a Multiple Alignment
alignment
msa
updated 2.5 years ago by
Pierre Lindenbaum
160k • written 2.5 years ago by
jdru
▴ 10
2
votes
8
replies
1.7k
views
6 follow
Phylogenetic Tree from Massive Multifasta Alignment?
tree
alignment
fasta
phylogeny
2.5 years ago by
jdru
▴ 10
1
vote
1
reply
619
views
Haplogrep classify error
haplogroup
mitochondria
haplogrep
updated 6 months ago by
angelika_95
• 0 • written 2.5 years ago by
jdru
▴ 10
12 results • Page
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