just now by
orzrzlyo
▴
20
0
votes
2
replies
56
views
0
votes
1
reply
73
views
795
votes
167
replies
141k
views
109 follow
updated 12 weeks ago by
Biostar
2.6k
•
written 7.4 years ago by
Istvan Albert
100k
0
votes
0
replies
52
views
0
votes
1
reply
97
views
updated 9 hours ago by
LChart
3.9k
•
written 11 hours ago by
leranwangcs
▴
120
1
vote
3
replies
297
views
updated 9 hours ago by
LChart
3.9k
•
written 1 day ago by
leranwangcs
▴
120
0
votes
0
replies
58
views
0
votes
1
reply
94
views
1
vote
5
replies
217
views
11 hours ago by
shpak.max
▴
50
0
votes
1
reply
114
views
updated 12 hours ago by
Ram
43k
•
written 13 hours ago by
michelle.swarovski
•
0
0
votes
1
reply
95
views
updated 13 hours ago by
GenoMax
141k
•
written 13 hours ago by
haiying.kong
▴
360
0
votes
1
reply
126
views
updated 10 hours ago by
sansan_96
▴
70
•
written 14 hours ago by
matteo.levorato
•
0
1
vote
0
replies
65
views
0
votes
1
reply
99
views
updated 14 hours ago by
Pierre Lindenbaum
161k
•
written 15 hours ago by
Sd
•
0
0
votes
0
replies
60
views
0
votes
0
replies
72
views
0
votes
2
replies
120
views
2
votes
0
replies
95
views
2
votes
1
reply
155
views
4
votes
5
replies
259
views
15 hours ago by
Begonia_pavonina
▴
150
3
votes
4
replies
253
views
updated 15 hours ago by
Buffo
★
2.4k
•
written 23 hours ago by
manaswiniparija3
▴
20
2
votes
0
replies
117
views
1
vote
1
reply
112
views
0
votes
0
replies
82
views
19 hours ago by
ferdinand
•
0
0
votes
0
replies
79
views
19 hours ago by
Balazs Horvath
▴
10
0
votes
0
replies
82
views
20 hours ago by
adarsh_pp
▴
40
2
votes
4
replies
265
views
0
votes
0
replies
92
views
21 hours ago by
quentinperriere
•
0
0
votes
1
reply
124
views
0
votes
2
replies
186
views
7
votes
7
replies
618
views
updated 13 hours ago by
Dunois
★
2.5k
•
written 1 day ago by
AdviceSeeker
•
0
0
votes
0
replies
117
views
0
votes
1
reply
167
views
1
vote
3
replies
356
views
updated 1 day ago by
josev.die
▴
60
•
written 14 days ago by
Begonia_pavonina
▴
150
0
votes
0
replies
147
views
0
votes
0
replies
123
views
1 day ago by
carlopecoraro2
★
2.5k
1
vote
1
reply
188
views
updated 21 hours ago by
Ben_Ensembl
★
2.4k
•
written 1 day ago by
naveedhasan2000
•
0
1
vote
2
replies
247
views
updated 11 hours ago by
Istvan Albert
100k
•
written 2 days ago by
Jiang
•
0
85
votes
23
replies
23k
views
17 follow
Tutorial:
Gene Set Enrichment Analysis
updated 2 days ago by
Gordon
•
0
•
written 3.5 years ago by
Hamid Ghaedi
3.2k
0
votes
3
replies
290
views
2
votes
1
reply
252
views
updated 2 days ago by
Alex Reynolds
35k
•
written 2 days ago by
natami
▴
10
0
votes
0
replies
153
views
updated 2 days ago by
Ram
43k
•
written 2 days ago by
arriyaz.nstu
▴
30
1
vote
1
reply
445
views
0
votes
0
replies
169
views
3
votes
4
replies
320
views
updated 2 days ago by
Pierre Lindenbaum
161k
•
written 2 days ago by
Sony
▴
10
0
votes
0
replies
161
views
2 days ago by
YiweiZhu
▴
30
11
votes
9
replies
11k
views
10 follow
0
votes
0
replies
164
views
updated 2 days ago by
Ram
43k
•
written 2 days ago by
anitharavichandran2211
•
0
0
votes
1
reply
194
views
updated 2 days ago by
Carlo Yague
8.6k
•
written 2 days ago by
Atul K.
•
0
1
vote
1
reply
234
views
Recent Votes
Recent Locations •
All
Ambler, just now
India, 4 minutes ago
United States, 5 minutes ago
Mexico, 6 minutes ago
India, 8 minutes ago
Belgium, 11 minutes ago
China, 12 minutes ago
Recent Awards •
All
Teacher to
Mensur Dlakic
★
27k
Popular Question to
wiscoyogi
▴
40
Popular Question to
tien
▴
10
Commentator to
Alex Reynolds
35k
Popular Question to
haiying.kong
▴
360
Popular Question to
Buffo
★
2.4k
Popular Question to
jon.brate
▴
290
Recent Replies
Answer: Getting marker genes for cell types
by
LChart
3.9k
It seems strange that celltypist would not identify these major cell classes -- you should double check your data quality. For the marker l…
Answer: gene body coverage with RSeqQC
by
jkim
▴
170
http://qualimap.conesalab.org/doc_html/index.html
Never tried rseqc, but qualimap provides a gene body coverage plot also.
Comment: How to get the reference panel sites for TOPMed hg37 and 38
by
bk11
★
2.3k
You can simply impute your genotyped data in TOPMed server. In that way you do not have to deal with downloading the reference panels (not …
Answer: Using adonis to include a random effect
by
LChart
3.9k
> why the first model doesn't have stats for both variables?
Your variables are multicollinear. This will always be true if you have mul…
Comment: How to row normalize a matrixplot?
by
bioinfo
▴
150
Thank you. That is what I ended up doing.
Comment: bash script
by
Ram
43k
What "error code at the top" are you talking about? Error code in response to the `srun -N 1 -t 0:01:00 bash -c "uname -a"` command? Also, …
Answer: how to get the variance explained by the independent variable from multivariate
by
LChart
3.9k
More explicitly:
```R
G <- mdmr::gower(distance.matrix)
eig <- eigen(G)
U <- eig$vectors ## this is the MDS embedding matrix
lambd…
Comment: bash script
by
bestone
▴
30
You write this "I noticed there may be a few parameters required for a SLURM job that could be missing from your script (partition to use, …
Comment: RNAseq 1 control 2 different treatment
by
sansan_96
▴
70
I think what you should do is do differential expression for your two contrasts: treatment 1 vs control and treatment 2 vs control. DESeq2 …
Comment: how to get the variance explained by the independent variable from multivariate
by
leranwangcs
▴
120
Thanks for your response! I have no statistics background so a bit hard to figure our the equation you provide with. I just want to find so…
Comment: Extracting information from gff3 file produced by augustus
by
Istvan Albert
100k
you should be more specific as to what you are trying to do.
in general parsing a GFF file, while error prone and annoying it is reasonabl…
Comment: Best way to deal with overlapping read names in merged BAM files
by
GenoMax
141k
See: https://gatk.broadinstitute.org/hc/en-us/articles/360035890671-Read-groups
`\t` is tab
<!-- this is a test -->
Comment: Best way to deal with overlapping read names in merged BAM files
by
shpak.max
▴
50
Thanks. If I understand correctly, this adds ID1 to the rg header in the first bam, etc. Could you please explain the syntax of the tsM:SAM…
Comment: Best way to deal with overlapping read names in merged BAM files
by
Pierre Lindenbaum
161k
not tested:
samtools addreplacerg -r "@RG\tID:ID1\tSM:SAMPLE1 -O BAM -o new1.bam old1.bam
samtools addreplacerg -r "@RG\tID:ID2\tSM:SAM…
Comment: Best way to deal with overlapping read names in merged BAM files
by
shpak.max
▴
50
Could you please direct me to an example which uses addreplacerg across an entire bamfile (i.e. I would need to add a read group tag for ea…
Traffic: 1606 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6