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Comment: Comment: How to compare the quality of assemblies
9 months ago by kirillkirilenko ▴ 40
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4
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1.3k
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How to compare the quality of assemblies
nextdenovo assembly hifiasm pacbio
9 months ago by kirillkirilenko ▴ 40
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1
reply
644
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Obtain satellite DNA monomer from dot plot
repeats satellites dot-plot
updated 13 months ago by ★ 1.5k • written 13 months ago by ▴ 40
2
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1
reply
488
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Shorten Illumina reads
RepeatExplorer2 Illumina paired-end
updated 14 months ago by 20k • written 14 months ago by ▴ 40
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0
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919
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Comment: Comment: Estimate Genome Size
14 months ago by kirillkirilenko ▴ 40
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1
reply
919
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Comment: Comment: Estimate Genome Size
14 months ago by kirillkirilenko ▴ 40
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4
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919
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Estimate Genome Size
jellyfish genome k-mer
14 months ago by kirillkirilenko ▴ 40
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0
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940
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Comment: Comment: Detect STRs in illumina library
15 months ago by kirillkirilenko ▴ 40
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4
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940
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Detect STRs in illumina library
repeats annotation STR
15 months ago by kirillkirilenko ▴ 40
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0
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940
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Comment: Comment: Detect STRs in illumina library
16 months ago by kirillkirilenko ▴ 40
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0
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1.1k
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Comment: Comment: Make a BedGraph file
19 months ago by kirillkirilenko ▴ 40
3
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3
replies
1.1k
views
Make a BedGraph file
BedGraph RepeatMasker BED
19 months ago by kirillkirilenko ▴ 40
3
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2
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914
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Choosing right statistical test in genomics
repeats genomics annotation statistics bed
updated 2.0 years ago by 27k • written 2.0 years ago by ▴ 40
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0
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560
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Metagenome analysis on EPI2ME ONT
metagenomics ONT 16S longreads
2.0 years ago by kirillkirilenko ▴ 40
0
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0
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1.4k
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Comment: Comment: Show genome coverage in IGV-browser
2.2 years ago by kirillkirilenko ▴ 40
1
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0
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1.4k
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Comment: Comment: Determine type of mutation
2.2 years ago by kirillkirilenko ▴ 40
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1
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1.4k
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Comment: Comment: Determine type of mutation
2.2 years ago by kirillkirilenko ▴ 40
4
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4
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1.4k
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Determine type of mutation
hisat2 alignment annotation
2.2 years ago by kirillkirilenko ▴ 40
0
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0
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1.4k
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Comment: Comment: Show genome coverage in IGV-browser
2.2 years ago by kirillkirilenko ▴ 40
0
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1
reply
1.4k
views
Comment: Comment: Show genome coverage in IGV-browser
2.2 years ago by kirillkirilenko ▴ 40
0
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5
replies
1.4k
views
Show genome coverage in IGV-browser
assembly annotation igv
2.2 years ago by kirillkirilenko ▴ 40
0
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1
reply
1.5k
views
Comment: Comment: Variant calling lost variant
2.2 years ago by kirillkirilenko ▴ 40
0
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1
reply
1.5k
views
Comment: Comment: Variant calling lost variant
2.2 years ago by kirillkirilenko ▴ 40
2
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7
replies
1.5k
views
Variant calling lost variant
bcftools samtools variant-calling alignment
updated 2.2 years ago by ★ 1.3k • written 2.2 years ago by ▴ 40
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1
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1.5k
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Comment: Comment: Variant calling lost variant
2.2 years ago by kirillkirilenko ▴ 40
0
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1
reply
702
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Find breakpoints using long reads
alignment nanopore samtools
2.3 years ago by kirillkirilenko ▴ 40
0
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1
reply
836
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Comment: Comment: Construct a phylogenetic tree of apes
2.4 years ago by kirillkirilenko ▴ 40
0
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3
replies
836
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Construct a phylogenetic tree of apes
phylogenetics msa
updated 2.4 years ago by ★ 1.5k • written 2.4 years ago by ▴ 40
0
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1
reply
660
views
Create library of TEs de novo
TEs DNA repetitive annotation
updated 2.4 years ago by 15k • written 2.4 years ago by ▴ 40
1
vote
1
reply
575
views
Convert mpileup file into dataframe
variant-calling samtools bcftools
updated 19 months ago by 44k • written 2.4 years ago by ▴ 40
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0
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1.7k
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Comment: Comment: What are rnd families predicted by RepeatModeler?
2.5 years ago by kirillkirilenko ▴ 40
0
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0
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575
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Classify unknown TEs produced by RepeatModeler
repeats TE genome
2.5 years ago by kirillkirilenko ▴ 40
0
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0
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1.5k
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Comment: Comment: Align short sequence against ONT reads
2.6 years ago by kirillkirilenko ▴ 40
0
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1
reply
1.5k
views
Comment: Comment: Align short sequence against ONT reads
2.6 years ago by kirillkirilenko ▴ 40
1
vote
5
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1.5k
views
Align short sequence against ONT reads
long-reads ONT alignment genome
updated 9 months ago by 44k • written 2.6 years ago by ▴ 40
0
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0
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1.4k
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Comment: Comment: Error executing process > consensus_classification in NanoCLUST
2.6 years ago by kirillkirilenko ▴ 40
0
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0
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1.7k
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Comment: Comment: Augustus output
2.7 years ago by kirillkirilenko ▴ 40
0
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1
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1.7k
views
Comment: Comment: Augustus output
2.7 years ago by kirillkirilenko ▴ 40
3
votes
5
replies
1.7k
views
Augustus output
annotation augustus
updated 2.7 years ago by 9.0k • written 2.7 years ago by ▴ 40
0
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1
reply
601
views
How to examine .hic files from Hi-C analysis?
Hi-C 3D-genome
updated 2.7 years ago by 148k • written 2.7 years ago by ▴ 40
0
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0
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1.9k
views
Comment: Comment: How to parse RepeatMasker output
2.8 years ago by kirillkirilenko ▴ 40
1
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3
replies
1.9k
views
How to parse RepeatMasker output
bash python RepeatMasker
updated 2.8 years ago by 55k • written 2.8 years ago by ▴ 40
3
votes
3
replies
2.5k
views
Perl modules for RepeatModeler
RepeatModeler Perl
updated 2.8 years ago by 55k • written 2.8 years ago by ▴ 40
2
votes
5
replies
4.2k
views
Demultiplexing nanopore reads
demultiplexing ONT barcodes
updated 2.4 years ago by ★ 2.7k • written 3.2 years ago by ▴ 40
2
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3
replies
1.9k
views
Nanopore metagenomics analysis
ONT metagenomics microbiome
updated 3.3 years ago by ▴ 420 • written 3.3 years ago by ▴ 40
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