User: ahmedakhokhar

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ahmedakhokhar110
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Posts by ahmedakhokhar

<prev • 45 results • page 1 of 5 • next >
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Comment: C: SNP Analysis on Single Cell Data from 10x
... Try to check it out! https://www.scrna-tools.org ...
written 13 days ago by ahmedakhokhar110
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Comment: C: print lines with specific members only
... Done, thank you ...
written 27 days ago by ahmedakhokhar110
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Comment: C: print lines with specific members only
... Thanks, I am new to 'awk', can you please give an example how can I match "p1'" and "w3" from a line and print? Thank you so very much. ...
written 27 days ago by ahmedakhokhar110
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Comment: C: print lines with specific members only
... I am working with "Bioinformatics" data, the p1, w3 are different cell types. ...
written 27 days ago by ahmedakhokhar110
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(Closed) print lines with specific members only
... I have a dataset with following format: a. 1 w p1,p2,w3 b. 1 w p1,p2,p3, w3 c. 1 w p1,w3 d. 1 w p1,w3 I want to print only the lines where 'p1,w3' present but not any of lines where p1, w3 are present in combination with other members like p1,p2,w3 ... c. ...
python R written 27 days ago by ahmedakhokhar110
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Comment: C: group samples based on shared mutations in a single multi samples vcf file
... Perfect, that can work nicely, one more piece of help. The sample names start with either "A_" or "B_" (followed by individual names). How can I count the sub-population of samples? Thank you very much. ...
written 4 weeks ago by ahmedakhokhar110
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Comment: C: group samples based on shared mutations in a single multi samples vcf file
... samples with 0/1 and 1/1 for the same positions with go as a separate entry but if I can get info of 1/1 only, that would be sufficient. The final aim is to know which samples share which mutation (position) and to separate them into groups. ...
written 4 weeks ago by ahmedakhokhar110
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Comment: C: group samples based on shared mutations in a single multi samples vcf file
... #Explanation shared mutations = the mutation positions present (shared) among different samples since not all mutations are present in all the samples. And, get an output file with a list of samples (name and count) with POS, COUNT and GT info. #DATA "input.vcf" file is a normal vcf file with &g ...
written 4 weeks ago by ahmedakhokhar110 • updated 4 weeks ago by Pierre Lindenbaum116k
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Comment: C: group samples based on shared mutations in a single multi samples vcf file
... No worries, I understand. ...
written 4 weeks ago by ahmedakhokhar110
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Comment: C: group samples based on shared mutations in a single multi samples vcf file
... FYI: I asked for help because I am learning and got myself stuck. ...
written 4 weeks ago by ahmedakhokhar110

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