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Answer: Answer: Batch effect correction to compare differentially expressed genes across dataset
2.0 years ago by andrew.j.skelton73 6.5k
4
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2
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7.2k
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Answer: Answer: EnhancedVolcano and scRNAseq differential gene expression
2.1 years ago by andrew.j.skelton73 6.5k
1
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0
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1.4k
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Answer: Answer: How to find differences between single cell RNA seq samples beyond cluster infor
2.6 years ago by andrew.j.skelton73 6.5k
3
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1
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3.1k
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Answer: Answer: Merge STAR Log.final.out files together
3.0 years ago by andrew.j.skelton73 6.5k
0
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0
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2.2k
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Answer: A: Query regarding transcriptome analysis
updated 4.3 years ago by 43k • written 8.2 years ago by 6.5k
1
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0
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5.0k
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Answer: A: Cufflinks bias correction and DESEq2
updated 4.3 years ago by 43k • written 8.2 years ago by 6.5k
2
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1
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2.7k
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Answer: A: Help needed with selecting top DE genes, Microarray data analysed with "limma"
updated 4.3 years ago by 43k • written 8.2 years ago by 6.5k
2
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1
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1.9k
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Answer: A: I want to find differentially expressed miRNAs between 4 groups
updated 4.3 years ago by 43k • written 8.2 years ago by 6.5k
1
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0
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2.9k
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Answer: A: house keeping genes for RNA-seq
updated 4.3 years ago by 43k • written 8.2 years ago by 6.5k
1
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1
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1.8k
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Answer: A: getting differential expressed genes between tissues, species and time series
updated 4.3 years ago by 43k • written 8.2 years ago by 6.5k
2
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0
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4.6k
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Answer: A: Run R in multi threaded
updated 4.3 years ago by 43k • written 8.2 years ago by 6.5k
2
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1
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1.7k
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Answer: A: Joining RNASeq librairies from different experiments
updated 4.3 years ago by 43k • written 8.3 years ago by 6.5k
0
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1
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3.2k
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Answer: A: cross platform microarray normalization
updated 4.3 years ago by 43k • written 8.3 years ago by 6.5k
1
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0
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3.7k
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Answer: A: Software to determine whether genes are related to cancer
updated 4.3 years ago by 43k • written 10.0 years ago by 6.5k
0
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0
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16k
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Answer: A: Displaying Bed file in IGV
updated 4.3 years ago by 43k • written 10.0 years ago by 6.5k
0
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1
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4.2k
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Answer: A: How to visualize a large number of GO terms in directed acyclic graphs
updated 4.3 years ago by 43k • written 10.0 years ago by 6.5k
2
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1
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6.3k
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Answer: A: After run Cufflinks - cuffdiff there is no information about isoforms, TSS, CDS.
updated 4.3 years ago by 43k • written 10.0 years ago by 6.5k
0
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1
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3.6k
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Answer: A: Using ensembl genomes and gtf conversion
updated 4.3 years ago by 43k • written 8.3 years ago by 6.5k
1
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1
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2.2k
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Answer: A: CLC workbench- subtractive genomics
updated 4.3 years ago by 43k • written 8.3 years ago by 6.5k
0
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1
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2.9k
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Answer: A: Facing error while trying to build SNP recalibration model using GATK
updated 4.3 years ago by 43k • written 8.3 years ago by 6.5k
0
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0
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4.0k
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Answer: A: Statistical tests for sanity check of expression data before inferring network
updated 4.3 years ago by 43k • written 10.0 years ago by 6.5k
1
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0
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9.3k
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Answer: A: How To Merge Two Microarrays Datasets?
updated 4.3 years ago by 43k • written 10.0 years ago by 6.5k
0
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1
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9.4k
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Answer: A: Extracting multiple sequences by ID from a FASTA file
updated 4.3 years ago by 43k • written 10.0 years ago by 6.5k
2
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0
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8.0k
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Answer: A: Chrom Sizes for Ensembl Reference
updated 4.3 years ago by 43k • written 10.0 years ago by 6.5k
1
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1
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3.9k
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Answer: A: conditional loop does not work for plotting in R !!
updated 4.3 years ago by 43k • written 8.3 years ago by 6.5k
0
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1
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5.0k
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Answer: A: R LIMMA Longitudinal analysis adjusting for continuous variables
updated 4.4 years ago by 43k • written 8.3 years ago by 6.5k
0
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0
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4.5k
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Answer: A: What R packages and functions can perform variant calling on .sam and .bam files
updated 4.4 years ago by 43k • written 8.4 years ago by 6.5k
0
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0
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1.7k
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Answer: A: microarray data analysis
updated 4.4 years ago by 43k • written 8.4 years ago by 6.5k
0
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1
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2.5k
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Answer: A: RNA-Seq single time-course experiments -- help building a hypothesis based on cl
updated 4.4 years ago by 43k • written 8.4 years ago by 6.5k
3
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1
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6.8k
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Answer: A: Merge TPM for transcripts to genes Kallisto
updated 4.4 years ago by 43k • written 8.4 years ago by 6.5k
2
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1
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4.3k
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Answer: A: Normalization based on housekeeping genes
updated 4.4 years ago by 43k • written 8.4 years ago by 6.5k
0
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0
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3.0k
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Answer: A: Complex design with limma R package
updated 4.4 years ago by 43k • written 8.4 years ago by 6.5k
2
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0
replies
2.6k
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Answer: A: How to create a simulated SNP genotypes dataset
updated 4.4 years ago by 43k • written 8.4 years ago by 6.5k
0
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1
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1.8k
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Answer: A: True meaning of the full_read_support flag in cufflinks output
updated 4.4 years ago by 43k • written 8.4 years ago by 6.5k
0
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1
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2.4k
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Answer: A: Microarray Multimapping probesets
updated 4.4 years ago by 43k • written 8.4 years ago by 6.5k
2
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0
replies
1.9k
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Answer: A: rosalind.info not working?
updated 4.4 years ago by 43k • written 8.4 years ago by 6.5k
1
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1
reply
3.0k
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Answer: A: RNA Seq on multiple samples
updated 4.4 years ago by 43k • written 8.4 years ago by 6.5k
4
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1
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7.5k
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Answer: A: cufflinks vs cuffquant
updated 4.4 years ago by 43k • written 8.4 years ago by 6.5k
1
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1
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1.4k
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Answer: A: How to interpret a Stringdb interaction network of a mouse-proteomics dataset wh
4.4 years ago by andrew.j.skelton73 6.5k
3
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1
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1.6k
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Answer: A: 450K complex design
updated 4.4 years ago by 43k • written 8.5 years ago by 6.5k
1
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0
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878
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Answer: A: Visualising individual humans in RNA-seq
4.4 years ago by andrew.j.skelton73 6.5k
0
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0
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2.9k
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Answer: A: Cufflinks genome guided de novo transcript assembly- increase in ambiguous read
updated 4.4 years ago by 43k • written 8.5 years ago by 6.5k
1
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0
replies
4.4k
views
Answer: A: Cuffcompare. Differences between class codes "=" and "i"
updated 4.4 years ago by 43k • written 8.5 years ago by 6.5k
0
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1
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1.5k
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Answer: A: Combining fastq reads of twin pairs to increase coverage
updated 4.4 years ago by 43k • written 8.5 years ago by 6.5k
2
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0
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3.5k
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Answer: A: Tophat's Mean Inner Distance between Mate Pairs
updated 4.4 years ago by 43k • written 8.5 years ago by 6.5k
1
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0
replies
3.9k
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Answer: A: DESeq2 for differential expression analysis of RNA-seq datawith few samples per
updated 4.4 years ago by 43k • written 8.5 years ago by 6.5k
0
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0
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7.7k
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Answer: A: Installing cutadapt on OS X
updated 4.4 years ago by 43k • written 8.5 years ago by 6.5k
0
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0
replies
3.1k
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Answer: A: Removing batch effects from RPKM data
updated 4.4 years ago by 43k • written 8.5 years ago by 6.5k
6
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3
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14k
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Answer: A: retrieve normalised count data from DESeq2
updated 4.4 years ago by 43k • written 8.5 years ago by 6.5k
0
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1
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2.6k
views
Answer: A: Using whole exome data from different protocols
updated 4.4 years ago by 43k • written 8.5 years ago by 6.5k
280 results • Page 1 of 6
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