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9
replies
3.8k
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Converting ms or msms output to PLINK or VCF files
SNP genome sequence
updated 20 months ago by ▴ 40 • written 7.1 years ago by ▴ 670
0
votes
0
replies
4.7k
views
Comment: Comment: Calculating ethnicity of a sample VCF
23 months ago by GabrielMontenegro ▴ 670
0
votes
0
replies
2.8k
views
Answer: Answer: vcftools not ouputting log file when run from perl
2.1 years ago by GabrielMontenegro ▴ 670
2
votes
2
replies
1.1k
views
Interpretting phastConsElements from USCS Table Browser
phastcons conservation genomics ucsc
updated 14 months ago by 43k • written 2.6 years ago by ▴ 670
0
votes
3
replies
3.3k
views
Problems Using Ldhat Example Files
ld
updated 3.3 years ago by 20 • written 10.2 years ago by ▴ 670
0
votes
0
replies
998
views
Comment: C: Placing random non-overlaping segments across genome [GenomicRanges]
3.7 years ago by GabrielMontenegro ▴ 670
0
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0
replies
5.1k
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Comment: C: Generate random genomic positions with R
3.7 years ago by GabrielMontenegro ▴ 670
1
vote
2
replies
998
views
Placing random non-overlaping segments across genome [GenomicRanges]
r genomicranges
3.7 years ago by GabrielMontenegro ▴ 670
0
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0
replies
575
views
Rounding error in allele frequency estimates in PLINK
SNP plink
3.9 years ago by GabrielMontenegro ▴ 670
0
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0
replies
2.0k
views
Comment: C: Get the longest transcript in GenomicRanges
3.9 years ago by GabrielMontenegro ▴ 670
0
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2
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2.0k
views
Comment: C: Get the longest transcript in GenomicRanges
3.9 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
2.0k
views
Comment: C: Get the longest transcript in GenomicRanges
3.9 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
2.0k
views
Comment: C: Get the longest transcript in GenomicRanges
3.9 years ago by GabrielMontenegro ▴ 670
2
votes
8
replies
2.0k
views
Get the longest transcript in GenomicRanges
ggbio r genomicranges
3.9 years ago by GabrielMontenegro ▴ 670
1
vote
3
replies
4.4k
views
SNP scoring using PLINK
plink SNP
updated 18 months ago by 43k • written 8.7 years ago by ▴ 670
0
votes
1
reply
5.7k
views
Comment: C: Gene plot similar to LocusZoom
updated 4.3 years ago by 43k • written 8.2 years ago by ▴ 670
15
votes
17
replies
8.5k
views
Remove not polymorphic sites from VCF
vcf genome
updated 2.2 years ago by ▴ 290 • written 5.2 years ago by ▴ 670
0
votes
1
reply
8.2k
views
Comment: C: Forcing A1/A2 alleles in PLINK in a VCF phased file
4.8 years ago by GabrielMontenegro ▴ 670
4
votes
1
reply
3.7k
views
Exclude sites on the basis of the proportion of missing data using BCFTOOLS
genome vcf vcftools bcftools
4.9 years ago by GabrielMontenegro ▴ 670
0
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0
replies
4.2k
views
Comment: C: Estimating LD score in PLINK
4.9 years ago by GabrielMontenegro ▴ 670
0
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1
reply
4.2k
views
Comment: C: Estimating LD score in PLINK
4.9 years ago by GabrielMontenegro ▴ 670
0
votes
4
replies
4.2k
views
Estimating LD score in PLINK
plink ld ldscore
updated 4.9 years ago by 43k • written 4.9 years ago by ▴ 670
0
votes
2
replies
3.9k
views
Single-Tissue eQTLs: P-value threshold in GTEX ??
snp RNA-Seq
updated 5.1 years ago by 87k • written 6.9 years ago by ▴ 670
0
votes
1
reply
8.5k
views
Comment: C: Remove not polymorphic sites from VCF
5.2 years ago by GabrielMontenegro ▴ 670
15
votes
5
replies
5.7k
views
Keep variants with 0% missing in VCF
vcf bcftools
updated 5.2 years ago by 87k • written 5.2 years ago by ▴ 670
2
votes
0
replies
1.8k
views
Comment: C: FATAL ERROR Exhausted system memory (PLINK 1.07)
5.2 years ago by GabrielMontenegro ▴ 670
1
vote
1
reply
3.7k
views
Comment: C: How to explain my QQ-plot result
5.2 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
8.5k
views
Comment: C: Remove not polymorphic sites from VCF
5.2 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
8.5k
views
Comment: C: Remove not polymorphic sites from VCF
5.2 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
8.5k
views
Comment: C: Remove not polymorphic sites from VCF
5.2 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
8.5k
views
Comment: C: Remove not polymorphic sites from VCF
5.2 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
8.5k
views
Comment: C: Remove not polymorphic sites from VCF
5.2 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
8.5k
views
Comment: C: Remove not polymorphic sites from VCF
5.2 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
3.0k
views
Comment: C: Haplotype block in PLINK using r2 values
5.4 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
3.0k
views
Comment: C: Haplotype block in PLINK using r2 values
5.4 years ago by GabrielMontenegro ▴ 670
0
votes
5
replies
3.0k
views
Haplotype block in PLINK using r2 values
plink SNP LD haplotypes
5.4 years ago by GabrielMontenegro ▴ 670
9
votes
13
replies
8.2k
views
Forcing A1/A2 alleles in PLINK in a VCF phased file
SNP PLINK VCF
updated 5.5 years ago by • 0 • written 6.6 years ago by ▴ 670
5
votes
2
replies
4.8k
views
Interpreting Ldhat Outputs
recombination
updated 5.6 years ago by • 0 • written 10.2 years ago by ▴ 670
0
votes
0
replies
15k
views
Answer: A: Visualize Effect Of Snp Variant On Protein Structure
updated 5.6 years ago by 43k • written 7.1 years ago by ▴ 670
0
votes
1
reply
1.9k
views
No output estimating LD between SNPs in VCF using PLINK
plink vcf
updated 5.7 years ago by 87k • written 5.7 years ago by ▴ 670
3
votes
2
replies
2.9k
views
Identifying mutations between haplotypes using haploNet (pegas) in R
R pegas haplotypes phylogenetics
updated 11 months ago by ▴ 40 • written 6.1 years ago by ▴ 670
0
votes
0
replies
23k
views
Comment: C: LD-decay in a r2 vs distance(cm) plot
6.2 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
3.2k
views
Answer: A: tools for Population branch statistics (PBS)
6.2 years ago by GabrielMontenegro ▴ 670
0
votes
0
replies
14k
views
Comment: C: What is population branch statistic (PBS)?
6.2 years ago by GabrielMontenegro ▴ 670
1
vote
1
reply
14k
views
Answer: A: What is population branch statistic (PBS)?
6.2 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
3.4k
views
Merging inconsistencies in PLINK
SNP PLINK
updated 6.4 years ago by 20 • written 6.6 years ago by ▴ 670
0
votes
3
replies
11k
views
Comment: C: How to interpret XPEHH (recent selection) score?
6.5 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
3.4k
views
Subsetting individuals in PLINK when IDs contain underscores "_"
plink
updated 6.6 years ago by ▴ 280 • written 6.6 years ago by ▴ 670
0
votes
1
reply
8.2k
views
Comment: C: Forcing A1/A2 alleles in PLINK in a VCF phased file
6.6 years ago by GabrielMontenegro ▴ 670
0
votes
1
reply
8.2k
views
Comment: C: Forcing A1/A2 alleles in PLINK in a VCF phased file
6.6 years ago by GabrielMontenegro ▴ 670
154 results • Page 1 of 4
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