0
votes
1
reply
31
views
11
votes
12
replies
362
views
0
votes
0
replies
30
views
0
votes
0
replies
42
views
updated 2 hours ago by
GenoMax
141k
•
written 3 hours ago by
N.Y.Wiyana-Hewage
•
0
795
votes
167
replies
141k
views
109 follow
updated 12 weeks ago by
Biostar
2.6k
•
written 7.4 years ago by
Istvan Albert
100k
0
votes
2
replies
132
views
0
votes
2
replies
131
views
0
votes
1
reply
70
views
2
votes
2
replies
256
views
updated 7 hours ago by
shelkmike
★
1.2k
•
written 14 hours ago by
kirillkirilenko
▴
30
0
votes
0
replies
55
views
updated 7 hours ago by
Ram
43k
•
written 7 hours ago by
samuelkalandarov2002
•
0
1
vote
1
reply
209
views
0
votes
1
reply
121
views
updated 7 hours ago by
Ram
43k
•
written 7 hours ago by
_quantum_girl_
▴
10
0
votes
0
replies
58
views
1
vote
4
replies
559
views
0
votes
0
replies
58
views
8 hours ago by
enferdeflame
•
0
0
votes
0
replies
60
views
0
votes
0
replies
67
views
updated 8 hours ago by
Ram
43k
•
written 10 hours ago by
carlopecoraro2
★
2.5k
1
vote
9
replies
572
views
updated 10 hours ago by
Elisabeth Gasteiger
★
2.4k
•
written 14 hours ago by
Jacky
•
0
0
votes
1
reply
154
views
0
votes
1
reply
162
views
0
votes
0
replies
70
views
updated 8 hours ago by
Ram
43k
•
written 11 hours ago by
carlopecoraro2
★
2.5k
4
votes
2
replies
220
views
0
votes
0
replies
69
views
Tutorial:
DNA Methylation: Sequencing Techniques
0
votes
1
reply
359
views
1
vote
2
replies
226
views
1
vote
4
replies
330
views
0
votes
3
replies
211
views
0
votes
0
replies
75
views
updated 8 hours ago by
Ram
43k
•
written 15 hours ago by
bioinfo223
▴
10
0
votes
0
replies
86
views
15 hours ago by
P.
•
0
0
votes
0
replies
89
views
0
votes
0
replies
120
views
22 hours ago by
renan.igor
•
0
1
vote
1
reply
182
views
updated 18 hours ago by
Ram
43k
•
written 1 day ago by
anasjamshed
▴
120
3
votes
1
reply
554
views
updated 23 hours ago by
etiennedanis
▴
20
•
written 19 months ago by
DareDevil
★
4.3k
0
votes
0
replies
106
views
0
votes
1
reply
197
views
5
votes
4
replies
468
views
3 hours ago by
BioinfGuru
★
1.7k
1
vote
1
reply
223
views
0
votes
3
replies
339
views
1
vote
1
reply
179
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
jammydodger123456
▴
40
0
votes
1
reply
301
views
0
votes
2
replies
281
views
20 hours ago by
22211020193
•
0
0
votes
0
replies
115
views
1
vote
2
replies
219
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
aniigodwinn
•
0
2
votes
3
replies
320
views
10 hours ago by
valentinatsar
•
0
1
vote
3
replies
227
views
2
votes
10
replies
555
views
2
votes
2
replies
324
views
0
votes
0
replies
221
views
4
votes
2
replies
1.7k
views
2
votes
7
replies
581
views
updated 10 minutes ago by
joe
▴
500
•
written 1 day ago by
quentinperriere
•
0
Recent Locations •
All
United States, just now
United States, 1 minute ago
Canada, 1 minute ago
Canada, 1 minute ago
United States, 6 minutes ago
Palau, 11 minutes ago
Turkey, 11 minutes ago
Recent Awards •
All
Commentator to
GenoMax
141k
Centurion to
jkbonfield
★
1.2k
Popular Question to
yueli7
▴
250
Popular Question to
Randy H
▴
110
Popular Question to
ManuelDB
▴
80
Popular Question to
lefthandgergo
▴
10
Recent Replies
Comment: Removing duplicates
by
joe
▴
500
I'd try those OP @samuel recommends
My guess is you're new to ONT, fast5 is the 'raw data' which is current over time...other than generat…
Comment: RNA seq differential expression analysis
by
swbarnes2
14k
No. Find a tutorial, try it, then if you have specific questions, ask of the galaxy help site.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
Sure. Or, one could do:
bash try.bash "Homo sapiens" AHR | xargs -I v_pdb curl -s -o v_pdb.pdb https://files.rcsb.org/view/v_pdb.pdb
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
This may be the best option.
Get the PDB ID's
$ ./get.sh "Mus musculus" AHR
4M4X
5NJ8
5V0L
8H77
Then use `curl` to g…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
It gives you the first 25 results though. I'll see if I can change that.
EDIT: I've updated that number to 250. I'm hoping you won't need …
Answer: Downloaded pdb's on rcsb.org
by
Ram
43k
I'm going to build off of OP's query and give them a simple script:
```bash
organism=$(echo $1 | sed 's/ /%20/g')
gene=$2
curl -s https:/…
Comment: miRNAs quantification using mirdeep2 tool
by
GenoMax
141k
This question does not make complete sense. If you have your own data files why do you need deep sequencing reads?
Genome (can be download…
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
For a non-programmer using the search builder link included above may be the best option. Even that is not very user friendly.
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
That's how they seem to have written their query - automating that is a bit of a pain though as it takes a crazy JSON as input.
Comment: Downloaded pdb's on rcsb.org
by
GenoMax
141k
You can use the "Advanced query" builder (https://www.rcsb.org/search/advanced ) to create a query like:
https://www.rcsb.org/search?requ…
Comment: Downloaded pdb's on rcsb.org
by
Ram
43k
PDB has a search API: https://search.rcsb.org/#search-example-1
Here's the JSON from your search query:
```
{
"query": {
"type": "grou…
Comment: Downloaded pdb's on rcsb.org
by
iamsmor
•
0
Thank you very much. Actually I looked at there, but actually I want to find something like according to search url like this [QUERY: Gene …
Traffic: 2002 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6