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414
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Comment: Comment: advice on rooting a tree in R
13 days ago by Matteo Ungaro ▴ 110
2
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2
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414
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advice on rooting a tree in R
R tree ggtree phylo
13 days ago by Matteo Ungaro ▴ 110
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259
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Comment: Comment: plot PLINK2.0 output with ggtree
25 days ago by Matteo Ungaro ▴ 110
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1
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259
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plot PLINK2.0 output with ggtree
ibs matrix plink ggtree
25 days ago by Matteo Ungaro ▴ 110
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203
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simulate a genome with specific event
simulation genome retrocopy
4 weeks ago by Matteo Ungaro ▴ 110
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585
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Comment: Comment: determine softmask regions from FASTA
9 weeks ago by Matteo Ungaro ▴ 110
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2
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585
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Comment: Comment: determine softmask regions from FASTA
9 weeks ago by Matteo Ungaro ▴ 110
2
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6
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585
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determine softmask regions from FASTA
BED FASTA softmask
updated 9 weeks ago by 15k • written 9 weeks ago by ▴ 110
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1.0k
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Comment: Comment: how to effectively pipe chromap into samtools view
7 months ago by Matteo Ungaro ▴ 110
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1.0k
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Comment: Comment: how to effectively pipe chromap into samtools view
7 months ago by Matteo Ungaro ▴ 110
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2
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1.0k
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Comment: Comment: how to effectively pipe chromap into samtools view
7 months ago by Matteo Ungaro ▴ 110
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6
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1.0k
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how to effectively pipe chromap into samtools view
samtools bash pipe
7 months ago by Matteo Ungaro ▴ 110
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575
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Comment: Comment: trailing paired-end slashes (/) in BAM file
7 months ago by Matteo Ungaro ▴ 110
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0
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575
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Comment: Comment: trailing paired-end slashes (/) in BAM file
7 months ago by Matteo Ungaro ▴ 110
1
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4
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575
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trailing paired-end slashes (/) in BAM file
awk BAM sed
updated 7 months ago by 45k • written 7 months ago by ▴ 110
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1
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583
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Comment: Comment: picard – scatter intervals by n uses
9 months ago by Matteo Ungaro ▴ 110
3
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3
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583
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picard – scatter intervals by n uses
bedtools intervals picard bed
updated 9 months ago by 165k • written 9 months ago by ▴ 110
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1.2k
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Comment: Comment: joint callset and vcf sorting, unknown TAG issue
updated 10 months ago by 165k • written 10 months ago by ▴ 110
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1.2k
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Comment: Comment: joint callset and vcf sorting, unknown TAG issue
10 months ago by Matteo Ungaro ▴ 110
2
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8
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1.2k
views
joint callset and vcf sorting, unknown TAG issue
sort bcftools GLNexus merge VCF
updated 10 months ago by 165k • written 10 months ago by ▴ 110
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1.2k
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Comment: Comment: joint callset and vcf sorting, unknown TAG issue
10 months ago by Matteo Ungaro ▴ 110
0
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1
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1.2k
views
Comment: Comment: joint callset and vcf sorting, unknown TAG issue
10 months ago by Matteo Ungaro ▴ 110
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0
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585
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Comment: Comment: bam merging for archaic samples
11 months ago by Matteo Ungaro ▴ 110
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2
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585
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bam merging for archaic samples
samtools bam
updated 11 months ago by 45k • written 11 months ago by ▴ 110
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647
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Comment: Comment: filtering VCF sites and impose whatever excluded ad missing
11 months ago by Matteo Ungaro ▴ 110
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2
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647
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Comment: Comment: filtering VCF sites and impose whatever excluded ad missing
11 months ago by Matteo Ungaro ▴ 110
2
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4
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647
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filtering VCF sites and impose whatever excluded ad missing
conditions vcf filters bcftools
11 months ago by Matteo Ungaro ▴ 110
5
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4
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1.3k
views
change order of violin plots in ggplot2
R ggplot2 violin-plots
updated 12 months ago by 45k • written 12 months ago by ▴ 110
3
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0
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1.3k
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Answer: Answer: change order of violin plots in ggplot2
updated 12 months ago by 45k • written 12 months ago by ▴ 110
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1.3k
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Comment: Comment: change order of violin plots in ggplot2
12 months ago by Matteo Ungaro ▴ 110
0
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1
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1.3k
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Comment: Comment: change order of violin plots in ggplot2
12 months ago by Matteo Ungaro ▴ 110
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1
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1.1k
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Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
13 months ago by Matteo Ungaro ▴ 110
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5
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1.1k
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PCA from plink2 for SGDP using a pangenome and DeepVariant
umap DeepVariant pangenome plink2 pca
updated 13 months ago by ▴ 470 • written 13 months ago by ▴ 110
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1
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1.1k
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Comment: Comment: PCA from plink2 for SGDP using a pangenome and DeepVariant
13 months ago by Matteo Ungaro ▴ 110
1
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0
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1.6k
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Comment: Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
16 months ago by Matteo Ungaro ▴ 110
1
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1
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1.6k
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Comment: Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
16 months ago by Matteo Ungaro ▴ 110
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1
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1.6k
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Comment: Comment: How to create a Venn Diagram for overlapping SVs from a merged VCF
16 months ago by Matteo Ungaro ▴ 110
8
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6
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1.6k
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How to create a Venn Diagram for overlapping SVs from a merged VCF
truvari structural-variants r vcf venn-diagram
16 months ago by Matteo Ungaro ▴ 110
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0
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478
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Determine INDELs number (both classes separately) from reference and graph-based VCF files
INDEL vcf
updated 17 months ago by 45k • written 17 months ago by ▴ 110
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0
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630
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Merged CRAM output
warning samtools CRAM merging
21 months ago by Matteo Ungaro ▴ 110
8
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4
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2.1k
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Merging CRAM files
samtools CRAM
updated 21 months ago by ★ 1.3k • written 21 months ago by ▴ 110
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1
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2.1k
views
Comment: Comment: Merging CRAM files
21 months ago by Matteo Ungaro ▴ 110
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0
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1.7k
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Comment: Comment: Edit and re-head BAM file
22 months ago by Matteo Ungaro ▴ 110
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0
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1.7k
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Comment: Comment: Edit and re-head BAM file
22 months ago by Matteo Ungaro ▴ 110
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1
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1.7k
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Comment: Comment: Edit and re-head BAM file
22 months ago by Matteo Ungaro ▴ 110
3
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6
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1.7k
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Edit and re-head BAM file
samtools BAM
updated 21 months ago by 45k • written 22 months ago by ▴ 110
2
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2
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925
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filter VCF based on FORMAT
vcf bcftools
updated 21 months ago by 45k • written 2.0 years ago by ▴ 110
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1
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853
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Comment: Comment: formatting VCF file for analyses
2.5 years ago by Matteo Ungaro ▴ 110
3
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3
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853
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formatting VCF file for analyses
VCF awk
updated 21 months ago by 45k • written 2.5 years ago by ▴ 110
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0
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455
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Chromosome Path in Pairtools
Pairtools
updated 21 months ago by 45k • written 3.0 years ago by ▴ 110
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