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2
votes
2
replies
384
views
advice on rooting a tree in R
R tree ggtree phylo
4 days ago by Matteo Ungaro ▴ 110
0
votes
1
reply
254
views
plot PLINK2.0 output with ggtree
ibs matrix plink ggtree
16 days ago by Matteo Ungaro ▴ 110
0
votes
0
replies
198
views
simulate a genome with specific event
simulation genome retrocopy
23 days ago by Matteo Ungaro ▴ 110
2
votes
6
replies
556
views
determine softmask regions from FASTA
BED FASTA softmask
updated 8 weeks ago by 15k • written 8 weeks ago by ▴ 110
3
votes
6
replies
965
views
how to effectively pipe chromap into samtools view
samtools bash pipe
7 months ago by Matteo Ungaro ▴ 110
1
vote
4
replies
555
views
trailing paired-end slashes (/) in BAM file
awk BAM sed
updated 7 months ago by 45k • written 7 months ago by ▴ 110
3
votes
3
replies
577
views
picard – scatter intervals by n uses
bedtools intervals picard bed
updated 9 months ago by 165k • written 9 months ago by ▴ 110
2
votes
8
replies
1.2k
views
joint callset and vcf sorting, unknown TAG issue
sort bcftools GLNexus merge VCF
updated 10 months ago by 165k • written 10 months ago by ▴ 110
0
votes
2
replies
576
views
bam merging for archaic samples
samtools bam
updated 10 months ago by 45k • written 11 months ago by ▴ 110
2
votes
4
replies
632
views
filtering VCF sites and impose whatever excluded ad missing
conditions vcf filters bcftools
11 months ago by Matteo Ungaro ▴ 110
5
votes
4
replies
1.3k
views
change order of violin plots in ggplot2
R ggplot2 violin-plots
updated 12 months ago by 45k • written 12 months ago by ▴ 110
0
votes
5
replies
1.0k
views
PCA from plink2 for SGDP using a pangenome and DeepVariant
umap DeepVariant pangenome plink2 pca
updated 13 months ago by ▴ 470 • written 13 months ago by ▴ 110
8
votes
6
replies
1.5k
views
How to create a Venn Diagram for overlapping SVs from a merged VCF
truvari structural-variants r vcf venn-diagram
16 months ago by Matteo Ungaro ▴ 110
0
votes
0
replies
471
views
Determine INDELs number (both classes separately) from reference and graph-based VCF files
INDEL vcf
updated 17 months ago by 45k • written 17 months ago by ▴ 110
0
votes
0
replies
617
views
Merged CRAM output
warning samtools CRAM merging
20 months ago by Matteo Ungaro ▴ 110
8
votes
4
replies
2.0k
views
Merging CRAM files
samtools CRAM
updated 20 months ago by ★ 1.3k • written 20 months ago by ▴ 110
3
votes
6
replies
1.7k
views
Edit and re-head BAM file
samtools BAM
updated 21 months ago by 45k • written 22 months ago by ▴ 110
2
votes
2
replies
916
views
filter VCF based on FORMAT
vcf bcftools
updated 21 months ago by 45k • written 2.0 years ago by ▴ 110
3
votes
3
replies
842
views
formatting VCF file for analyses
VCF awk
updated 21 months ago by 45k • written 2.5 years ago by ▴ 110
0
votes
0
replies
450
views
Chromosome Path in Pairtools
Pairtools
updated 21 months ago by 45k • written 3.0 years ago by ▴ 110
2
votes
3
replies
2.5k
views
How to clean PacBio reads
PacBio HiFi CLR
updated 3.0 years ago by ▴ 470 • written 3.0 years ago by ▴ 110
3
votes
7
replies
1.4k
views
Issues in downloading read sets — sra fastq-dump
script cluster sra fastq-dump
updated 3.0 years ago by 87k • written 3.0 years ago by ▴ 110
1
vote
10
replies
1.9k
views
Help with mitochondrial sequences from GenBank!!!
ftp genbank mitochondrial
3.8 years ago by Matteo Ungaro ▴ 110
23 results • Page 1 of 1
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