22 minutes ago by
cedric.blais
•
0
0
votes
0
replies
5
views
0
votes
2
replies
316
views
0
votes
0
replies
13
views
1 hour ago by
eking28
•
0
1
vote
4
replies
269
views
1
vote
3
replies
265
views
0
votes
1
reply
100
views
0
votes
2
replies
63
views
0
votes
0
replies
32
views
1
vote
2
replies
108
views
1
vote
0
replies
37
views
4 hours ago by
J.
▴
10
0
votes
0
replies
49
views
795
votes
167
replies
143k
views
109 follow
updated 3 months ago by
Biostar
2.7k
•
written 7.4 years ago by
Istvan Albert
100k
0
votes
1
reply
54
views
updated 5 hours ago by
bk11
★
2.4k
•
written 5 hours ago by
kilcdincer
▴
10
0
votes
2
replies
74
views
4 hours ago by
trkfs
•
0
0
votes
0
replies
42
views
0
votes
1
reply
93
views
0
votes
1
reply
75
views
0
votes
1
reply
84
views
0
votes
3
replies
114
views
3
votes
2
replies
187
views
3 hours ago by
analyst
▴
50
0
votes
0
replies
42
views
0
votes
1
reply
333
views
updated 9 hours ago by
aw7
▴
280
•
written 23 days ago by
abhishekghadge
•
0
1
vote
1
reply
160
views
0
votes
0
replies
55
views
1
vote
0
replies
51
views
2
votes
3
replies
197
views
3
votes
2
replies
125
views
updated 11 hours ago by
ATpoint
82k
•
written 12 hours ago by
jennyp0706
•
0
0
votes
1
reply
119
views
updated 12 hours ago by
Philipp Bayer
8.4k
•
written 1 day ago by
samRayne
•
0
0
votes
1
reply
203
views
updated 12 hours ago by
Zeng Jingyu
▴
60
•
written 4 days ago by
Nikki
•
0
2
votes
13
replies
2.8k
views
6 follow
updated 14 hours ago by
Anitha
•
0
•
written 4.8 years ago by
ww22runner
▴
60
0
votes
1
reply
156
views
0
votes
1
reply
201
views
updated 22 hours ago by
Zhenyu Zhang
★
1.2k
•
written 3 days ago by
jain72744
▴
10
2
votes
5
replies
506
views
1
vote
2
replies
291
views
updated 5 hours ago by
Ram
43k
•
written 1 day ago by
t.fortunato.asquini
•
0
2
votes
1
reply
222
views
updated 1 day ago by
pjb39
▴
210
•
written 3 days ago by
beantkapoor16
▴
10
0
votes
2
replies
173
views
updated 11 hours ago by
colindaven
6.4k
•
written 1 day ago by
ramendra.sarma
•
0
0
votes
0
replies
85
views
2
votes
8
replies
298
views
updated 1 day ago by
Pierre Lindenbaum
161k
•
written 1 day ago by
Matteo Ungaro
▴
100
0
votes
0
replies
102
views
1 day ago by
carlopecoraro2
★
2.5k
0
votes
1
reply
209
views
updated 1 day ago by
Mathew
▴
120
•
written 3 days ago by
Lambodarswain316
•
0
2
votes
2
replies
254
views
7 hours ago by
Christopher
•
0
6
votes
7
replies
325
views
1 day ago by
sansan_96
▴
90
2
votes
3
replies
231
views
2
votes
1
reply
204
views
updated 2 days ago by
Pierre Lindenbaum
161k
•
written 2 days ago by
melissachua90
▴
70
9
votes
7
replies
7.1k
views
updated 2 days ago by
Ruqaiya
•
0
•
written 5.7 years ago by
xiaozhongzhiping
▴
20
0
votes
4
replies
347
views
6
votes
4
replies
13k
views
0
votes
2
replies
204
views
0
votes
6
replies
371
views
updated 1 day ago by
Pierre Lindenbaum
161k
•
written 2 days ago by
ajbarrett98
•
0
Recent Votes
Recent Locations •
All
United States, just now
United States, 2 minutes ago
United States, 4 minutes ago
CU Boulder, 4 minutes ago
UK, 6 minutes ago
Japan, 6 minutes ago
UCLA, 9 minutes ago
Recent Awards •
All
Scholar to
kalavattam
▴
190
Commentator to
Santosh Anand
5.7k
Popular Question to
lagartija
▴
160
Popular Question to
bioinfo
▴
150
Popular Question to
Sara
▴
30
Popular Question to
anasjamshed
▴
120
Recent Replies
Answer: FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last plac
by
David Langenberger
11k
Two last seats have just become available. Apply now, if you want them.
Comment: featureCounts output summary assigned value higher than uniquely mapped reads fr
by
GenoMax
142k
You always need to add the following option when you are using `-p` to count paired-end reads.
--countReadPairs If specified, fragm…
Comment: Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so t
by
mropri
▴
150
Hi swbarnes2, that was the problem, they were not numeric but as character columns. converted them and it fixed the error. Thank you for yo…
Answer: featureCounts output summary assigned value higher than uniquely mapped reads fr
by
Prawesh
•
0
I figured out:
Since featureCounts counts fragments and not reads, we have pair-end data that means **Assigned** value from the output w…
Answer: Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read
by
kalavattam
▴
190
> My question is this: "mate reverse strand" (flag 16/0x10) or "read reverse strand" (flag 32/0x20) do not directly relate to the strandedn…
Answer: How to interpret infinite odds ratio?
by
bhumm
▴
140
As you stated, your problem is likely division by 0. See this [Cross-Validated][1] post that seems to be very similar to your problem.
In …
Comment: Duplicated sequence samtools
by
GenoMax
142k
Consider using SLURM job arrays if you want to use a `for` loop inside a single SLURM job: https://hpc.nmsu.edu/discovery/slurm/job-arrays/
Answer: Duplicated sequence samtools
by
Pierre Lindenbaum
161k
the sequence c_000007023807_aloha2_low_cov is duplicated in the reference
grep c_000007023807_aloha2_low_cov path/to/reference.fasta
Comment: imputation through beagle
by
analyst
▴
50
Thank you so much dthorbur. Yes I am new to imputation analysis. I will follow your kind suggestions.
Thanks again!
Answer: Benchmarking RNASeq Variant Calling Pipeline (Short Reads)
by
lagartija
▴
160
I don't know but another way of doing it would be to combine different datasets of different strains that you know are clonal. Then you kno…
Comment: consensus sequence calling
by
bk11
★
2.4k
Please check out these posts
https://www.biostars.org/p/367626/
Answer: Splitting Seurat object by sample layers
by
bk11
★
2.4k
You can do the following-
Idents(SeuratObj) <- "orig.ident"
control_set <- subset(SeuratObj, idents = c("counts.control","data.…
Comment: Galaxy StringTie error
by
GenoMax
142k
> I have sent a bug report to the Galaxy administrator
If you have not done so please post this in Galaxy help forum for directed help: h…
Comment: 44% Successfully Assigned Fragments with featureCounts after 85% uniquely mapped
by
Thind amarinder
▴
340
Wondering, if it was total RNAseq data? or ployA
Traffic: 2362 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6