updated 2 hours ago by
Mensur Dlakic
★
27k
•
written 9 hours ago by
O.rka
▴
710
0
votes
1
reply
71
views
0
votes
1
reply
91
views
updated 5 hours ago by
Gordon Smyth
★
7.0k
•
written 18 hours ago by
hagl
▴
10
0
votes
1
reply
90
views
updated 7 hours ago by
Gordon Smyth
★
7.0k
•
written 14 hours ago by
Guille
•
0
795
votes
167
replies
142k
views
109 follow
updated 3 months ago by
Biostar
2.7k
•
written 7.4 years ago by
Istvan Albert
100k
1
vote
1
reply
94
views
updated 10 hours ago by
Gordon Smyth
★
7.0k
•
written 12 hours ago by
pairedttest
▴
10
2
votes
6
replies
1.8k
views
7 follow
0
votes
0
replies
130
views
4
votes
8
replies
425
views
4
votes
7
replies
480
views
7 follow
updated 3 hours ago by
dsull
★
5.8k
•
written 4 days ago by
qudrat.nii
▴
10
1
vote
1
reply
109
views
0
votes
0
replies
67
views
19
votes
11
replies
14k
views
10 follow
2
votes
2
replies
206
views
3
votes
0
replies
108
views
updated 12 hours ago by
Ram
43k
•
written 23 hours ago by
Claire Watson
▴
60
0
votes
2
replies
179
views
updated 12 hours ago by
Ram
43k
•
written 1 day ago by
The_PyPanda
▴
10
0
votes
0
replies
108
views
3
votes
3
replies
183
views
1
vote
0
replies
79
views
0
votes
0
replies
82
views
0
votes
0
replies
82
views
0
votes
1
reply
108
views
0
votes
0
replies
75
views
3
votes
3
replies
205
views
0
votes
0
replies
89
views
0
votes
0
replies
100
views
0
votes
1
reply
136
views
updated 1 day ago by
ATpoint
82k
•
written 1 day ago by
AaronJaime
•
0
0
votes
2
replies
193
views
0
votes
2
replies
224
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
Assa Yeroslaviz
★
1.8k
1
vote
1
reply
162
views
1
vote
5
replies
277
views
updated 18 hours ago by
bk11
★
2.4k
•
written 1 day ago by
starswillfade
▴
10
0
votes
0
replies
102
views
0
votes
0
replies
95
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
91
views
1
vote
0
replies
109
views
0
votes
0
replies
96
views
1 day ago by
synat.keam
▴
100
0
votes
0
replies
125
views
0
votes
1
reply
425
views
updated 1 day ago by
ginellegrenier
•
0
•
written 4 months ago by
Clayton
•
0
3
votes
4
replies
258
views
1 day ago by
QX
•
0
2
votes
1
reply
179
views
updated 1 day ago by
Adrian Altenhoff
★
1.1k
•
written 2 days ago by
hemantcnaik
•
0
0
votes
0
replies
107
views
2
votes
4
replies
261
views
updated 1 day ago by
Ram
43k
•
written 2 days ago by
ashaneev07
▴
20
2
votes
3
replies
221
views
updated 1 day ago by
Pierre Lindenbaum
161k
•
written 2 days ago by
analyst
▴
30
0
votes
1
reply
161
views
updated 2 days ago by
b.contreras.moreira
▴
170
•
written 2 days ago by
Broccoli
•
0
0
votes
3
replies
224
views
0
votes
1
reply
191
views
2
votes
4
replies
2.4k
views
updated 2 days ago by
ZhangYuanfeng
•
0
•
written 2.4 years ago by
Frazier Baker
•
0
1
vote
2
replies
247
views
2
votes
3
replies
294
views
updated 13 hours ago by
Ram
43k
•
written 2 days ago by
Ming Tommy Tang
★
3.9k
0
votes
4
replies
2.7k
views
updated 2 days ago by
evawillms183
•
0
•
written 8.3 years ago by
andrepleao
•
0
0
votes
0
replies
131
views
Recent Locations •
All
USA, just now
United States, 20 minutes ago
United States, 22 minutes ago
Hong Kong, 23 minutes ago
India, 30 minutes ago
India, 33 minutes ago
Chile, 33 minutes ago
Recent Awards •
All
Popular Question to
candron
▴
10
Scholar to
Alex Reynolds
35k
Popular Question to
chaco001
▴
40
Commentator to
GenoMax
141k
Popular Question to
rheab1230
▴
140
Popular Question to
BioinfGuru
★
1.7k
Recent Replies
Answer: Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC:
by
Mensur Dlakic
★
27k
They say that we remember better things we figured out on our own, rather than things we were taught. You were literally two clicks away fr…
Comment: Heatmap and rna-seq
by
dsull
★
5.8k
https://maayanlab.cloud/clustergrammer/
It's a web-based tool (can also be a python jupyter widget) that I find useful for exploring a pat…
Answer: Limma Analysis Agilent Microarray Data (GPL1708)
by
Gordon Smyth
★
7.0k
There is an Agilent array case study in the limma User's Guide, which you might find helpful and somewhat simpler.
I don't recommend col…
Answer: Correct way to compare multiple treaments between RNA-Seq samples using edgeR?
by
Gordon Smyth
★
7.0k
The comparison you've done seems exactly right to test whether treatment 2 modifies or enhances the effect of treatment 1.
Have you exam…
Answer: How to use limma to find differentially expressed genes in response to a continu
by
Gordon Smyth
★
7.0k
There's no need for form a contrast because the score variable is already in the model. A continuous variable is its own contrast. Just run…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
▴
10
Oh wow, bedops closest-features, how did I overlook that!! I didn't know about it; thank you! Your awk script is beautiful. This worked per…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
▴
10
Thank you Pierre! I'll try this out with my full data set.
Answer: DNA methylation preprocessing
by
cao510927
▴
30
I happend to see one paper doing the similar thing, share it with you guys, "A systematic evaluation of normalization methods and probe rep…
Answer: Create a new bed file with all pairwise combinations between two other bed files
by
Alex Reynolds
35k
I think Pierre's answer might be correct for your test input, but it doesn't account for the start position of the reference element and so…
Comment: Highest variable features in single cell data
by
bk11
★
2.4k
You need to be clear about how `Seurat` defines highly variable genes here. Highly variable genes are the genes that have very high express…
Comment: Heatmap and rna-seq
by
GenoMax
141k
Please include a link when you are recommending a tool. There can be programs with similar names.
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
Ram
43k
Simple:
```r
data <- lapply(files, read_tsv)
data <- Reduce(merge, data) # or Reduce(full_join, data)
```
<a href="" title="Text added bec…
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
by
ATpoint
82k
You can make each process use a dedicated environment, see https://www.nextflow.io/docs/latest/conda.html#use-existing-conda-environments
…
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
BioinfGuru
★
1.7k
Hi,
Just thought I'd share this code snippet here for when each file contains multiple samples. I tried using lapply (as suggested by Ram)…
Traffic: 1535 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6