Bioinformatics Answers

0 votes 0 answers 3 views	Why am I getting so many unmapped reads in STAR, classified as "too short"? star mapping mappers rnaseq rna-seq 14 minutes ago by carmeyeii89 20•5
2 votes 3 answers 56 views	variant caller of choice? variant-caller 2 hours ago by richardc.gsc 10•1 • 6 minutes ago by Sangwoo Kim 150•5
7 votes 4 answers 74 views	Sequence Length Distribution from a fastq file sequence length distribution fastq 3 hours ago by deepthithomaskannan 20•3 • 9 minutes ago by Manu Prestat ♦ 2,060•1
0 votes 0 answers 25 views	How to generate axtNet file? ucsc axtnet axt blastz kent 57 minutes ago by Ge 40•4
0 votes 2 answers 45 views 1 bookmark	Variant Control data control variant-caller 2 hours ago by richardc.gsc 10•1 • 1 hour ago by Jordan 210•5
6 votes 7 answers 209 views 1 bookmark	Quick and easy way to map SNPs to genes (or regions near genes) snp mapping hapmap r panther 5 days ago by confusedious 0•2 • 2 hours ago by richardc.gsc 10•1
0 votes 1 answer 64 views	Encode Genome Browser: how to correlate DNaseI hypersensitivity with RNA-seq? data encode 7 hours ago by khandarius 0•1 • 2 hours ago by Alex Reynolds ♦ 3,390•1•8
0 votes 2 answers 90 views	Pathway Enrichment & genes shared between the pathways enrichment r 10 hours ago by Dataminer 1,690•3•16 • 3 hours ago by enunvillafer 10•3
0 votes 0 answers 69 views	How to instantiate a SequencDB class for use in the SeqSimilaritySearcher interface of Biojava java biojava blastp database 1 day ago by PedroBarbosa 0•2 • 3 hours ago by Istvan Albert ♦♦ 31,440•2•15•35
0 votes 1 answer 55 views	How to obtain True Positive and True Negative datasets to be used in training a docking predictor docking vina 5 hours ago by Kevin 80•5 • 3 hours ago by Chupvl 390•1•6
11 votes 2 answers 151 views	Need help understanding spliced sequence alignment algorithm alignment homework algorithm 1 day ago by corn8bit 70•4
9 votes 3 answers 127 views	identifying genes that lie either side of intergenic regions ucsc intergenic 1 day ago by anurupadevi 110•5 • 4 hours ago by Pablo 1,310•1•9
2 votes 1 answer 65 views	How to perform a pathway or network level analysis of rare variants? system-biology exome-sequencing case-control difference 18 hours ago by hanguangchun 20•1 • 5 hours ago by JC ♦ 3,590•2•5
1 vote 1 answer 66 views	Ideas for presenting Pathway enrichment pathway-enrichment visualisation heatmaps 6 hours ago by ChIP 80•4 • 5 hours ago by k.nirmalraman 310•6
5 votes 4 answers 132 views	Search motif in raw reads motif search read 12 hours ago by Nicobxl 1,620•2•12 • 5 hours ago by k.nirmalraman 310•6
0 votes 0 answers 44 views	Problems removing selected water molecules within a range in Pymol pymol visualization structure 6 hours ago by anfelvas 0•1
0 votes 1 answer 53 views	How to interpret the results produced by Verify3D Structure Evaluation server? verify3d model evaluation 8 hours ago by paulawambui 0•2 • 7 hours ago by Istvan Albert ♦♦ 31,440•2•15•35
0 votes 0 answers 107 views	Unable to delete tmp files of samtools sort samtools sort lock 19 hours ago by chentong.biology 20•4
6 votes 1 answer 101 views	Obtain position of numbers in python ARRAY index position python array 14 hours ago by rosarylimyt 50•3 • 12 hours ago by David W ♦ 2,330•2•8
21 votes 4 replies 232 views 4 bookmarks	Tutorial: list of Bioinformatics books bioinformatics learn tutorial books 1 day ago by medhat.helmy77 840•6 • 12 hours ago by Raghul 140•8

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