0
votes
1
reply
53
views
0
votes
1
reply
669
views
1
vote
1
reply
164
views
795
votes
167
replies
142k
views
109 follow
updated 3 months ago by
Biostar
2.7k
•
written 7.4 years ago by
Istvan Albert
100k
2
votes
6
replies
1.1k
views
0
votes
0
replies
48
views
9 hours ago by
rene.j.erhardt
▴
20
0
votes
9
replies
231
views
1
vote
2
replies
149
views
0
votes
0
replies
77
views
8
votes
8
replies
632
views
0
votes
0
replies
82
views
0
votes
0
replies
80
views
21 hours ago by
Chris
▴
260
0
votes
1
reply
266
views
0
votes
2
replies
277
views
2
votes
3
replies
262
views
updated 23 hours ago by
Arup Ghosh
3.2k
•
written 1 day ago by
chaco001
▴
40
1
vote
3
replies
283
views
updated 16 hours ago by
Mensur Dlakic
★
27k
•
written 1 day ago by
O.rka
▴
710
0
votes
1
reply
170
views
updated 1 day ago by
Gordon Smyth
★
7.0k
•
written 2 days ago by
hagl
▴
10
0
votes
2
replies
200
views
1
vote
1
reply
152
views
updated 1 day ago by
Gordon Smyth
★
7.0k
•
written 1 day ago by
pairedttest
▴
10
3
votes
6
replies
1.9k
views
7 follow
0
votes
0
replies
383
views
4
votes
8
replies
540
views
4
votes
7
replies
600
views
7 follow
updated 1 day ago by
dsull
★
5.9k
•
written 5 days ago by
qudrat.nii
▴
10
19
votes
11
replies
14k
views
10 follow
2
votes
2
replies
267
views
3
votes
0
replies
155
views
updated 1 day ago by
Ram
43k
•
written 2 days ago by
Claire Watson
▴
60
0
votes
2
replies
229
views
updated 1 day ago by
Ram
43k
•
written 2 days ago by
The_PyPanda
▴
10
0
votes
0
replies
162
views
3
votes
3
replies
234
views
1
vote
0
replies
123
views
0
votes
0
replies
134
views
0
votes
0
replies
130
views
0
votes
0
replies
122
views
3
votes
3
replies
256
views
0
votes
0
replies
134
views
0
votes
0
replies
148
views
0
votes
1
reply
185
views
updated 2 days ago by
ATpoint
82k
•
written 2 days ago by
AaronJaime
•
0
0
votes
2
replies
246
views
0
votes
2
replies
280
views
updated 2 days ago by
Ram
43k
•
written 3 days ago by
Assa Yeroslaviz
★
1.8k
1
vote
2
replies
280
views
19 hours ago by
Francesco
▴
10
1
vote
6
replies
384
views
1 day ago by
starswillfade
▴
10
0
votes
0
replies
148
views
0
votes
0
replies
141
views
updated 2 days ago by
Ram
43k
•
written 3 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
140
views
3 days ago by
Emily
▴
10
1
vote
0
replies
155
views
0
votes
0
replies
140
views
3 days ago by
synat.keam
▴
100
0
votes
0
replies
172
views
0
votes
1
reply
473
views
updated 3 days ago by
ginellegrenier
•
0
•
written 4 months ago by
Clayton
•
0
3
votes
4
replies
313
views
2 days ago by
QX
•
0
Recent Votes
Recent Locations •
All
Germany, just now
United States, just now
ETH Zurich, 1 minute ago
United Kingdom, 6 minutes ago
United States, 7 minutes ago
United States, 7 minutes ago
United States, 7 minutes ago
Recent Awards •
All
Popular Question to
husensofteng
▴
410
Popular Question to
Raheleh
▴
260
Popular Question to
Aspire
▴
300
Popular Question to
rene.j.erhardt
▴
20
Popular Question to
yueli7
▴
250
Popular Question to
a_bis
▴
40
Recent Replies
Comment: Downloading full alignments from Pfam
by
GenoMax
141k
Not as convenient but the entire set of full alignments can be downloaded here: https://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pf…
Comment: How many reads for WGS Sequencing?
by
GenoMax
141k
> What does clipped Fastq mean?
Probably means that NCBI has already scanned and trimmed adapter sequencers.
> both forward and revers…
Comment: How many reads for WGS Sequencing?
by
GenoMax
141k
You can use the default `adapters.fa` file included in the `resources` folder of [**BBMap suite**][1] (program to use is `bbduk.sh`) or a p…
Comment: How many reads for WGS Sequencing?
by
GenoMax
141k
Only way to find out is to try. It may work but if it is not going to then you will find that out quick (process would likely crash because…
Comment: How many reads for WGS Sequencing?
by
Ruqaiya
•
0
Also, there is no mention of adapter sequence so which adapter sequence should i use to remove it from some other reads?
Comment: How many reads for WGS Sequencing?
by
Ruqaiya
•
0
Also, Do you think i can reproduce at least most part of the data from the paper just on my laptop? It has 4 logical processors (Intel(R) C…
Comment: NGS forensics: how to know if data is fabricated
by
Philipp Bayer
8.3k
While I think this is an interesting case, I've before found cleaned 'raw' data on SRA. It happens: bioinformaticians receive the raw data,…
Comment: How many reads for WGS Sequencing?
by
Ruqaiya
•
0
1. What does clipped Fastq mean? both forward and reverse reads in the same file?
2. Why would you remove 2000bp contigs? I feel it will gi…
Comment: How many reads for WGS Sequencing?
by
Ruqaiya
•
0
Well, I downloaded both the reads from-[LINK][1]. Thats all i did. Thats the only thing i need to do, right?
I'l try spades.
[1]: http…
Comment: How to assign cell types after integration in scRNA
by
Francesco
▴
10
Thanks for the fast reply.. however i had only partially understood the answer. Is correct saying that low-representation integration and b…
Answer: Can I run cellassign on samples independently if there is batch effect present?
by
Francesco
▴
10
Hi! Whenever you do make independent analysis or aggregate data and analyze them, most cell type assignment tools start from raw counts to …
Answer: ChIP-seq datasets: input samples omitted?
by
ATpoint
82k
In my hands (and from what I know based on many years here) inputs are almost exclusively used during peak calling to correct for loci-spec…
Comment: How to assign cell types after integration in scRNA
by
ATpoint
82k
No difference here. After all you typically want a label per cluster/group, so either subset to the control condition to do the assignment,…
Comment: Differential Expression using Isoseq-supplemented reference transcriptome
by
gaoanwei
•
0
I found the question and ASK the GPT4 turbo
Traffic: 1795 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6