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Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
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GenoMax
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For those samples it appears that raw data was not submitted. Just an assembly.
$ esearch -db biosample -query SAMN08009548 | elink -…
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**I have already tried this code.
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I need at least one supporting material to find out the survi…
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This is unhelpful and doesn't answer my question.
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
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It seems that the authors in this paper have used paired-end sequences only for their analysis, and for that, they would also have used the…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
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Harshita
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Thank you so much for helping me out in this!
I have used most of the sequences that are found in this table. But, some samples like the…
Answer: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
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GenoMax
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Looks like the samples are from this project: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA320483&o=acc_s%3Aa
This table has the SR…
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> My sites are in an Excel file right now
![enter image description here][1]
<!-- was an American educator and academic administrator…
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> I have a list of ~1,300 single bp sites
Convert your file to plain text [**BED format**][1] (three fields required).
Use `bedtools slo…
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sainavyav22
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It worked, Thank you very much!
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I'm unsure you'll be able to identify whole chromosomes that are not core from illumina reads alone. That might be easier to do with a micr…
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Dear marco,
We need to ask ourselves why it is not working for all bioprojects ? I have looked into this, and observed that as long as the…
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You ***want*** ~3000 DE genes?<a href="" title="Text added because biostars parser needs it"></a>
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Hello, just wanted to check in if the code has been fixed yet? Thank you.
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