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116,881 results • Page
3 of 2338
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0
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110
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News:
Online course. -Time series analysis and Forecasting in R
Time-Series
Forecasting
R
Stastics
4 days ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
463
views
HLA-HD tool for genomic imputation
genomics
imputation
bash
updated 4 days ago by
Javier
• 0 • written 3 months ago by
fra.r.silvestro
▴ 10
0
votes
1
reply
243
views
ERROR: Duplicate entry "..." in sam header; samtools view: failed to add PG line to the header
sort.
SAMtools.
BAM.
SAM.
updated 4 days ago by
GenoMax
142k • written 4 days ago by
Sony
▴ 10
5
votes
5
replies
274
views
Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent
EGSEA
3 days ago by
Chris
▴ 280
0
votes
2
replies
210
views
Differentail gene expression results
differential
expression
gene
rna-seq
Deseq2
updated 3 days ago by
swbarnes2
14k • written 4 days ago by
ahmad.sajad4541
• 0
1
vote
9
replies
345
views
UMI-Tools knee-method has great influence on the results of white list
single-cell
whitelist
UMI
RNA
UMI-Tools
updated 1 day ago by
i.sudbery
19k • written 4 days ago by
Assa Yeroslaviz
★ 1.8k
1
vote
1
reply
163
views
student
epitranscriptomics
updated 4 days ago by
ATpoint
82k • written 4 days ago by
useriwa
• 0
0
votes
0
replies
107
views
Imputation of missing genotypes
panel
beagle
imputation
4 days ago by
analyst
▴ 50
0
votes
3
replies
170
views
trying to count a pattern in my fastq file using bbduk
java
bbduk
bbmap
fastq
updated 4 days ago by
GenoMax
142k • written 4 days ago by
Assa Yeroslaviz
★ 1.8k
7
votes
1
reply
162
views
Tutorial:
removeBatchEffect explained using base R linear models
limma
effects
batch
removebatcheffects
updated 4 days ago by
dariober
14k • written 4 days ago by
nhaus
▴ 360
2
votes
2
replies
172
views
Is therer any suggestions on mapping rate of WGBS data?
mapping
read
alignment
WGBS
3 days ago by
Zeng Jingyu
▴ 60
1
vote
2
replies
257
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
updated 4 days ago by
Weiwen
• 0 • written 5 days ago by
MICOS
▴ 10
0
votes
4
replies
253
views
Correlation Analysis
statistics
methylation
NGS
expression
14 hours ago by
Researcher
▴ 30
1
vote
2
replies
175
views
Repeated testing/data mining in RNA Seq
repeated
RNA-Seq
mining
testing
data
4 days ago by
robert.flynn.21
• 0
1
vote
1
reply
213
views
Tool:
Converting Nebula Genomics Data to 23andMe Format
23andMe
Nebula
updated 4 days ago by
Michael
54k • written 5 days ago by
Guillermo
• 0
1
vote
5
replies
336
views
Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, Complexity, and Use Cases
fmindex
bwt
updated 3 days ago by
Michael
54k • written 4 days ago by
qwertyuiop26
• 0
0
votes
1
reply
171
views
What is the proper way to identify the cell types of scRNAseq cluster?
scRNAseq
updated 4 days ago by
ATpoint
82k • written 5 days ago by
MAPK2
▴ 40
0
votes
2
replies
244
views
Job:
Bioinformatics Analyst - Laboratory Medicine and Pathology
job
updated 4 days ago by
Xiaofen
• 0 • written 4 days ago by
toddknutson
▴ 60
0
votes
1
reply
131
views
Seeking Guidance on Identifying Mutations in DARs from ATAC Data in Cancer Genomes
Genomics
Bioinformatics
ATACseq
CancerResearch
updated 4 days ago by
LChart
3.9k • written 4 days ago by
David
• 0
2
votes
2
replies
175
views
Where to get the following bed file?
WES
bed
reference
file
updated 5 days ago by
GenoMax
142k • written 5 days ago by
wyuan37
• 0
0
votes
0
replies
112
views
Get Paired TCRa/b from MIXCR
python
r
mixcr
tcr_seq
5 days ago by
Scott McKay
▴ 30
0
votes
0
replies
104
views
Cellphonedb results
cpdb
visulization
cellphonedb
5 days ago by
piotto
▴ 20
0
votes
0
replies
131
views
Job:
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
Genomics
Alzheimer
multiomics
neuroimaging
5 days ago by
belloy
• 0
0
votes
3
replies
242
views
How to compute TPM normalized values for TCGA miRNA data?
TCGA
normalization
TPM
miRNA
updated 4 days ago by
swbarnes2
14k • written 5 days ago by
Ngrin
• 0
1
vote
6
replies
693
views
anRichment is missing
WGCNA
anRichment
updated 5 days ago by
GenoMax
142k • written 6 months ago by
michael.flower.14
▴ 180
1
vote
1
reply
205
views
Gene ontology and homologs
gene-ontology
updated 5 days ago by
geneontologyhelp
▴ 400 • written 6 days ago by
beshka194
• 0
1
vote
2
replies
232
views
error in R code: Error in fit_avlr(...), : wn incorrectly formatted
R
updated 5 days ago by
zx8754
11k • written 5 days ago by
snajafy
• 0
0
votes
0
replies
112
views
Cox Model with interaction item interpretation
Cox
5 days ago by
Bine
▴ 60
0
votes
0
replies
100
views
how to downlad slices of CRAM fro ICGC ARGO
icgc
samtools
cram
2 days ago by
Javier
• 0
1
vote
7
replies
494
views
Question regarding WGCNA
WGCNA
Network-construction
2 days ago by
deepak
• 0
0
votes
0
replies
105
views
vdjtools
vdjtools
5 days ago by
yueli7
▴ 250
1
vote
0
replies
147
views
Herald:
The Biostar Herald for Monday, May 06, 2024
herald
5 days ago by
Biostar
2.7k
0
votes
1
reply
285
views
16S rRNA microbiome differential abundance analysis with DESeq2 finds same microbial Genus in both groups.
microbiome
16S
DESeq2
updated 4 days ago by
andres.firrincieli
3.6k • written 5 days ago by
Antonio
• 0
0
votes
0
replies
116
views
Error while loading model of Spatial data deconvolution using cell2location
Python
cell2location
updated 5 days ago by
Ram
43k • written 5 days ago by
sidrah.maryam
▴ 50
0
votes
0
replies
101
views
Normalizing AMR gene count data
abundance
RGI
updated 5 days ago by
Ram
43k • written 5 days ago by
arshad1292
▴ 100
1
vote
0
replies
127
views
Help with VG Toolkit: VCF Output is Empty
vg
updated 5 days ago by
Pierre Lindenbaum
161k • written 5 days ago by
sarumonsus
▴ 10
1
vote
2
replies
316
views
Tissue-specific DEG analysis with DEseq2
DEseq2
RNA-seq
DEG
R
5 days ago by
M.
▴ 30
0
votes
0
replies
120
views
How to implement an IGV to streamlit app?
python
streamlit
igv
5 days ago by
avigail.shnaider
• 0
1
vote
5
replies
321
views
install.packages("imudata") - package ‘imudata’ is not available for this version of R
r
updated 5 days ago by
Ram
43k • written 5 days ago by
snajafy
• 0
0
votes
2
replies
271
views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so the model cannot be fit as specified.
DESeq2
updated 5 days ago by
GenoMax
142k • written 6 days ago by
mropri
▴ 150
0
votes
1
reply
301
views
DMRcate ranges liftover hg19 to hg38
DMRcate
Liftover
DMR
Methylation
annotation
updated 5 days ago by
aaron.stevens
• 0 • written 3 months ago by
sativus
▴ 20
2
votes
2
replies
239
views
STRING-DB API can't find my protein but I can find it when I go to the STRING-DB website directly
STRING-DB
protein
STRING-DB-API
5 days ago by
brandon
• 0
0
votes
0
replies
129
views
Mitogenomes gap closure and making circular genome
gapclosure
Mitogenomes
validation
circulargenome
6 days ago by
KHURRAM SHAHZAD
• 0
2
votes
5
replies
391
views
install package: package ‘gmwm’ is not available for this version of R
r
updated 5 days ago by
Ram
43k • written 6 days ago by
snajafy
• 0
0
votes
0
replies
119
views
Looking for phytopathogenic, Nitrogen-Fixing, and Growth-Promoting databases for Metagenomic Analysis
Bacteria
Metagenomics
Database
6 days ago by
Christopher
• 0
4
votes
1
reply
242
views
LD-prune variants while maintaining a list of SNPs
snp
vcf
plink
filtering
independent
updated 5 days ago by
zx8754
11k • written 7 days ago by
Jautis
▴ 560
2
votes
2
replies
327
views
Association study using SNP data
Association
Allele
Parentage
SNP
6 days ago by
drajangirija
• 0
0
votes
0
replies
113
views
News:
Online course: Bioinformatic analysis of transposable elements
GenomeAssembly
Transcriptomics
TransposableElements
ManualCuration
6 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
121
views
Clarification on StringTie's `--merge` parameters
stringtie
stringtie-merge
6 days ago by
DGTool
• 0
2
votes
3
replies
308
views
Problem with Seurat package in PercentageFeatureSet function
cell
single
updated 2 days ago by
bk11
★ 2.4k • written 6 days ago by
Yoosef
▴ 60
116,881 results • Page
3 of 2338
Recent Votes
Answer: install package
Answer: error in fun(x((i)), ...) : only defined on a data frame with all numeric alike
A: How Can I Make A Bed File?
Bioinformatics: Where do I start
Ideal PC configurations and operating system for bioinformatics laboratory
A: VCF files: Change Chromosome Notation
VCF files: Change Chromosome Notation
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Recent Replies
Answer: Kraken2 database
by
Mathew
▴ 60
Sorry, what analysis are you trying to perform with these databases? Based on your question, it appears you are using Kraken2 and Bracken.…
Comment: error in fun(x((i)), ...) : only defined on a data frame with all numeric alike
by
Mathew
▴ 60
I looked up a publication using CIBERSORT to see how they got the package, and indeed they acquired it through official website application…
Comment: Adata.raw.X in LIANA, something wrong with conversion from Seurat to adata in py
by
fracarb8
★ 1.6k
If you are using R, you should check the liana R implementation (https://github.com/saezlab/liana).
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
ajbarrett98
• 0
Thank you Pierre, I am going to take some time to get my head around this and report back if it works.
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
ajbarrett98
• 0
Thanks for the crosspost! Just trying to get things figured out.
Answer: error in fun(x((i)), ...) : only defined on a data frame with all numeric alike
by
ATpoint
82k
To the best of my knowledge, CIBERSORT is and has always and only been available via the official website application from Stanford. Whatev…
Comment: BioLabDonkey - new Mac program for molecular biologists
by
vytarasov
▴ 180
Update of BioLabDonkey - Version 5.6 - In silico PCR function is added.
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File
by
Pierre Lindenbaum
161k
cross posted: https://stackoverflow.com/questions/78462732/ > Please mind that posting the same question to multiple sites can be perceive…
Comment: java.nio.bufferunderflowexception haplotypecaller error for bqsr reads
by
Pierre Lindenbaum
161k
command is missing, version is missing.
Answer: Failed to open VCF file
by
Pierre Lindenbaum
161k
> Error: Failed to open vcf file Fixing: No such file or directory one of your file is missing, obviously. Check files exist using `[…
Comment: Align paired and unpaired reads simultaneously using Bowtie2?
by
Ruqaiya
• 0
I have forward reads that didn't require any trimming except for adapter sequence. but the reverse read file required trimming so i trimmed…
Comment: Trimmomatic: What is the difference between paired and unpaired output files in
by
Ruqaiya
• 0
can we not mention unpaired ? i have a reverse read file that needs a lot of trimming but forward file is usable. I don't understand how to…
Comment: Genome Assembly task + Protein Translation, assignment advice on a question
by
rackbersingh
• 0
It is an indeed an old assignment question, I am doing revision and practicing answering questions for an upcoming test and just wanted to …
Comment: How are score_weights calculated in this code?
by
carolofharvest
▴ 40
I've found this code [in this site :][1] . It doesn't seem like they've shared any additional information about this in the previous line…
Comment: Correlation Analysis
by
Researcher
▴ 30
Thank you so much. I ran based on the above code and found that all gene columns have the same values, which you obtain as the average corr…
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