Entering edit mode
9.1 years ago
silas008
▴
170
Hi...
I need to align reads of miRNA sequencing on 2 small genomes of 2 virus. I use currently bowtie2 in --very-sensitive-local
mode. There is an specific mode for this small genomes? What is the best mode of alignment for this type of mapping?
Thank you
Your miRNA's are 21b? And your virus around ..k in x segments?
I have found bbmap to work best.