Hi everyone,
I have list of about 600 SNPs, and I want to find how many no-redundant SNPs existed in my list:
the method is based on the LD block, if the SNPs were found in a LD block, then we only sum once for these SNPs
Because I am not good at script, is there any existed one? OR could you tell me how to do it?
Thanks!
what format is your file in? perhaps show a few lines of your file (edit the post and paste it).
only one column with rs# such as: rs5945619 rs4291438 rs2112226 rs2285550 rs760778 rs5965655 rs5924895 rs5924915 rs5924952 rs760105 rs2269368 rs1557501 rs4542114