Question

Functional categories assignment

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2.3 years ago

wes ▴ 90

May I know how to search for functional category of the below eggNOG code?

ENOG410Z3U5
ENOG410XNRZ
ENOG410YJYG

I managed to download the functional category for eggNOG code start with COG but could not find the eggNOG code start with ENOG

eggNOG • 928 views

ADD COMMENT • link 2.3 years ago by wes ▴ 90

score 0 · Answer 1 · 2022-07-04

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2.3 years ago

Jean-Karim Heriche 27k

The 4 in the ENOG4 prefix indicates that these identifiers belong to eggNOG version 4. You probably won't find them in the current version 5.

ADD COMMENT • link 2.3 years ago by Jean-Karim Heriche 27k

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but should be able to find it in version 4 database is it? Any idea where to find at version 4 database?

I tried to find here also cnt find them.

ADD REPLY • link 2.3 years ago by wes ▴ 90

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They can be found in the search box of version 4.5 here: http://eggnog45.embl.de/#/app/home then you probably need to search into the right file(s). For example the search result for ENOG410Z3U5 tells you it's an all organism term/group and it can be found in the all organisms annotation file: http://eggnog45.embl.de/download/eggnog_4.5/data/NOG/NOG.annotations.tsv.gz
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