Entering edit mode
8 months ago
Salvatore
•
0
Do you know any way to retrieve 3'UTR transcript coordinate (0 is the start of the 5'UTR) without considering introns but just the mature mRNA?
what have you tried so far?
downloading from biomart genomic coordinates and converting in transcript with genomeTotranscript but it's not that efficient
What do you mean exactly by "0 is the start of the 5'UTR". The 3` UTR is from the end of the ORF to the end of the last exon, so the wording is a little confusing at the moment.
i mean the counting of the coordinates should start from the start of the transcript (5'utr start then)