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Limit : this year
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355 results • Page
2 of 8
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3
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3
replies
956
views
Forum:
Importance of Data Structures for Bioinformatics?
data-structures
updated 8 months ago by
Ram
43k • written 8 months ago by
S
• 0
19
votes
14
replies
2.2k
views
Forum:
What is the amount of sequencing data produced annually?
data
research
sequencing
updated 8 months ago by
Jeremy Leipzig
22k • written 8 months ago by
vincenthus
▴ 70
19
votes
10
replies
1.6k
views
Forum:
Pain points using commercial clouds
gpt
tinybio
updated 8 months ago by
vincenthus
▴ 70 • written 8 months ago by
Sasha
▴ 850
9
votes
6
replies
2.0k
views
6 follow
Forum:
GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl
bug
GTF
updated 8 months ago by
ATpoint
82k • written 18 months ago by
dlaehnemann
▴ 30
3
votes
2
replies
647
views
Forum:
How to contribute to the next edition of Biostars Handbook
handbook
updated 8 months ago by
Ram
43k • written 8 months ago by
Fouad
▴ 20
3
votes
6
replies
1.5k
views
6 follow
Forum:
Is Bioinformatics a Professional Degree?
career
degree
8 months ago by
anasjamshed
▴ 120
2
votes
5
replies
976
views
6 follow
Forum:
Biostar as a next generation version
meta
mobile-app
updated 7 months ago by
Ram
43k • written 8 months ago by
rj.rezwan
• 0
2
votes
9
replies
1.2k
views
Forum:
open source projects looking for contributors
open-source
updated 8 months ago by
vincenthus
▴ 70 • written 8 months ago by
claudiofr
▴ 20
0
votes
0
replies
552
views
Forum:
Recruiters: what do you expect on a junior bioinformatician?
career
skills
updated 8 months ago by
Ram
43k • written 8 months ago by
gallardodiazmiriam
▴ 20
3
votes
4
replies
1.4k
views
Forum:
Discussion: Uploading terabytes of data to NCBI SRA
NCBI
WGS
archiving
servers
remote
updated 8 months ago by
GenoMax
142k • written 9 months ago by
James Reeve
▴ 130
0
votes
0
replies
589
views
Forum:
I have a Master's and little experience in Bioinformatics - what would be the next best step?
career
updated 9 months ago by
Ram
43k • written 9 months ago by
RM123
▴ 10
1
vote
3
replies
805
views
Forum:
Spaceranger missing spatial coordinates [Discussion]
Visium
updated 9 months ago by
GenoMax
142k • written 9 months ago by
morovatunc
▴ 550
11
votes
8
replies
1.4k
views
6 follow
Forum:
How to write a review article in bioinformatics
article
review
updated 8 months ago by
Ram
43k • written 9 months ago by
joey
▴ 10
365
votes
58
replies
70k
views
44 follow
Forum:
Recommend Your Favorite Bioinformatics Books
education
books
updated 7 months ago by
Ram
43k • written 14.2 years ago by
Istvan Albert
100k
1
vote
2
replies
18k
views
Forum:
Would you rather analyze a dataset with a strong, non-collinear batch effect, or a weak, collinear batch effect.
collinear
latent
batch-effect
variable
GLM
9 months ago by
LauferVA
4.2k
0
votes
3
replies
3.9k
views
10 follow
Forum:
Discussion question: Cutoff for SNP phylogeny
Phylogenetics
SNP
written 17 months ago by
SushiRoll
▴ 120
2
votes
3
replies
818
views
Forum:
Purely analytic or in silico manuscripts that have significantly improved biological understanding
dry-lab
updated 10 months ago by
GenoMax
142k • written 10 months ago by
LauferVA
4.2k
0
votes
2
replies
1.3k
views
Forum:
[Detailed Question] How to Normalize of Metagenomics Gene Abundances (with HMMs models)
normalization
updated 11 months ago by
Asaf
10k • written 11 months ago by
Davide
• 0
33
votes
23
replies
4.3k
views
8 follow
Forum:
Is there a file format better suited for the era of pangenomics than the .vcf? What are its attributes?
VCF
file-format
genomics
updated 11 months ago by
Jeremy Leipzig
22k • written 11 months ago by
LauferVA
4.2k
7
votes
8
replies
2.0k
views
Forum:
Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind
career
11 months ago by
K
• 0
2
votes
3
replies
884
views
Forum:
Mapping a predicted sequence to a genome
predicted
map
alignment
sequence
updated 11 months ago by
Mensur Dlakic
★ 27k • written 11 months ago by
Andy
• 0
0
votes
0
replies
457
views
Forum:
Recommendation sought for differential exon usage of a single gene
splicing
differential-exon-usage
updated 11 months ago by
Ram
43k • written 11 months ago by
nick_b55
▴ 10
7
votes
4
replies
1.1k
views
Forum:
[Meta] Use of AI
AI
Artificial-Intelligence
meta
ChatGPT
updated 11 months ago by
Ram
43k • written 11 months ago by
LauferVA
4.2k
2
votes
2
replies
617
views
Forum:
Colleges
Colleges
india
universities
updated 11 months ago by
Ram
43k • written 11 months ago by
mahimanepalli36
• 0
19
votes
15
replies
2.0k
views
6 follow
Forum:
Cross out line in Biostars
meta
updated 12 months ago by
Ram
43k • written 6.0 years ago by
Bastien Hervé
5.3k
103
votes
42
replies
31k
views
34 follow
Forum:
List of cloud genomics companies
cloud-genomics
updated 5 weeks ago by
Jeremy Leipzig
22k • written 10.5 years ago by
14134125465346445
★ 3.6k
4
votes
5
replies
1.4k
views
Forum:
I'm looking for a mentor in Bioinformatics
mentor
teaching
updated 3 months ago by
alva
• 0 • written 13 months ago by
cwaingartentrabajo
• 0
10
votes
15
replies
2.2k
views
Forum:
How should reference genome fasta files be distributed by UCSC?
reference-genome
fasta
freeze
ucsc-genome-browser
updated 11 months ago by
Jeremy Leipzig
22k • written 14 months ago by
Maximilian Haeussler
★ 1.6k
5
votes
4
replies
1.4k
views
Forum:
Best BAM viewer in 2022
sam
bam
updated 11 months ago by
Ram
43k • written 17 months ago by
Cornelius
▴ 70
1.2k
votes
206
replies
60k
views
108 follow
Forum:
What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 11 months ago by
Raony Guimarães
★ 1.4k • written 13.1 years ago by
Jeremy Leipzig
22k
15
votes
13
replies
4.3k
views
8 follow
Forum:
Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice
industry
phd
updated 4 months ago by
benformatics
3.9k • written 18 months ago by
buhbs
▴ 30
3
votes
2
replies
866
views
Forum:
From protein-protein interaction networks to..
workflow
computational
knowledge
limitations
updated 11 months ago by
Ram
43k • written 23 months ago by
BioInfoBeginner
▴ 50
3
votes
1
reply
936
views
Forum:
How to download multiple .gz files from Ensembl Protists database
wget
protist
ensembl
updated 3 months ago by
BioinfGuru
★ 1.7k • written 2.2 years ago by
rohitsatyam102
▴ 860
17
votes
14
replies
3.4k
views
Forum:
Asking for feedback on a Python library for computing alignments
alignment
Python
updated 11 months ago by
Alexander
▴ 220 • written 2.3 years ago by
bernhard.liebl
▴ 60
0
votes
1
reply
778
views
Forum:
What are the most important papers/methods in Genomics/Bioinformatics of 2021?
publications
updated 11 months ago by
Ram
43k • written 2.4 years ago by
carlopecoraro2
★ 2.5k
12
votes
7
replies
7.2k
views
Forum:
Differences between SMART-seq2, SMART-seq3, and 10x
cell
smartseq
UMIs
single
10x
updated 7 weeks ago by
dsull
★ 6.0k • written 2.7 years ago by
hamarillo
▴ 70
0
votes
0
replies
525
views
Forum:
Poll about a structured description of a tool, a pipeline
survey
pipeline
updated 11 months ago by
Ram
43k • written 2.8 years ago by
Anastasiya M
• 0
0
votes
2
replies
791
views
Forum:
A new data analytics platform for next gen sequencing
next-gen-sequencing
RNA-Seq
updated 3 months ago by
Ram
43k • written 3.4 years ago by
thezgabby
• 0
8
votes
1
reply
7.3k
views
Forum:
What are chromatin states ?
genome
ChIP-Seq
3 months ago by
rohitsatyam102
▴ 860
2
votes
6
replies
3.1k
views
Forum:
RIP CentOS, CentOS 8 to be EOL'd in 2021
centos
linux-distro
os
updated 11 months ago by
Ram
43k • written 3.4 years ago by
5heikki
11k
0
votes
0
replies
931
views
Forum:
MAGs annotation tools
annotation
genome
updated 11 months ago by
Ram
43k • written 4.3 years ago by
willnotburn
▴ 50
4
votes
5
replies
1.3k
views
Forum:
Is Bioinformatics enough? Is it taken seriously?
career
updated 11 months ago by
Ram
43k • written 3.5 years ago by
neelk1123
• 0
1
vote
2
replies
854
views
Forum:
bioinformatics career choice - could use guidance
career
updated 11 months ago by
Ram
43k • written 3.5 years ago by
ssc229
• 0
19
votes
7
replies
1.3k
views
9 follow
Forum:
DNA in pixels
genome
alignment
sequencing
updated 11 months ago by
Ram
43k • written 3.5 years ago by
mervsen
▴ 30
0
votes
1
reply
591
views
Forum:
What are the best online tutoring sites for biology help?
Biology
updated 11 months ago by
Ram
43k • written 3.5 years ago by
hendersonken325
• 0
4
votes
1
reply
731
views
Forum:
Help with Bioinformatics Course
cancer
updated 11 months ago by
Ram
43k • written 3.6 years ago by
deemassh
• 0
0
votes
0
replies
711
views
Forum:
Interview: Identifying the allelic expression of INDEL mutations
SNP
RNA-Seq
alignment
updated 11 months ago by
Ram
43k • written 3.6 years ago by
adglink
• 0
73
votes
14
replies
4.3k
views
12 follow
Forum:
Things you wish you knew when entering the bioinformatics field
pitfalls
advice
updated 11 months ago by
Ram
43k • written 3.7 years ago by
jared.andrews07
★ 16k
0
votes
4
replies
1.0k
views
Forum:
Genes inhibiting each other's expression
Gene-expression
updated 11 months ago by
Ram
43k • written 3.7 years ago by
priya.bmg
▴ 60
9
votes
6
replies
1.5k
views
Forum:
How to start my career in Bioinformatics
career
updated 11 months ago by
Ram
43k • written 3.7 years ago by
Sashi G
▴ 10
355 results • Page
2 of 8
Recent Votes
Answer: RNAseq coverage vs depth for transcript isoform expression?
constructing pangenome through psvcp
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Differential Expression with limma: Contrast and Design Matrix, combinatorial approach valid?
Answer: RNAseq coverage vs depth for transcript isoform expression?
Answer: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
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Recent Replies
Comment: constructing pangenome through psvcp
by
analyst
▴ 50
Fixed the issue by updating nucmer version.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
GenoMax
142k
Can you create a small test database (`makeblastdb`) from your query file and try to run the search against the same file and see if that w…
Comment: calculating genomic coverage/ base overlap in R
by
1769mkc
★ 1.2k
you can `dput(head(df)` for the both the data frame so that other can test for possible solutions
Comment: Broad and Narrow peaks
by
ATpoint
82k
What is your question? It's unclear.
Comment: Help with Biopython for Beginner
by
Joe
21k
One question before offering more solutions: are you trying to learn Python with this as an example problem, or are you trying to find the …
Answer: RNAseq coverage vs depth for transcript isoform expression?
by
Gordon Smyth
★ 7.2k
See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167. Table 1 o…
Comment: How to handle duplicated genes in TCGA data?
by
txema.heredia
▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA
by
mavy
▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object
by
Alex Reynolds
35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF)
by
aidangcruickshank
▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data?
by
Ngrin
• 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2
by
swbarnes2
14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot
by
LauferVA
4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
hannes.bongartz
• 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
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