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355 results • Page 2 of 8
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3
votes
3
replies
959
views
Forum: Importance of Data Structures for Bioinformatics?
data-structures
updated 8 months ago by 43k • written 8 months ago by • 0
19
votes
14
replies
2.2k
views
Forum: What is the amount of sequencing data produced annually?
data research sequencing
updated 8 months ago by 22k • written 8 months ago by ▴ 70
19
votes
10
replies
1.6k
views
Forum: Pain points using commercial clouds
gpt tinybio
updated 8 months ago by ▴ 70 • written 8 months ago by ▴ 850
9
votes
6
replies
2.0k
views
6 follow
Forum: GTF files from Ensembl Releases 105 and 106 unsorted
Ensembl bug GTF
updated 8 months ago by 82k • written 18 months ago by ▴ 30
3
votes
2
replies
651
views
Forum: How to contribute to the next edition of Biostars Handbook
handbook
updated 8 months ago by 43k • written 8 months ago by ▴ 20
3
votes
6
replies
1.5k
views
6 follow
Forum: Is Bioinformatics a Professional Degree?
career degree
8 months ago by anasjamshed ▴ 120
2
votes
5
replies
981
views
6 follow
Forum: Biostar as a next generation version
meta mobile-app
updated 7 months ago by 43k • written 8 months ago by • 0
2
votes
9
replies
1.2k
views
Forum: open source projects looking for contributors
open-source
updated 8 months ago by ▴ 70 • written 8 months ago by ▴ 20
0
votes
0
replies
553
views
Forum: Recruiters: what do you expect on a junior bioinformatician?
career skills
updated 9 months ago by 43k • written 9 months ago by ▴ 20
3
votes
4
replies
1.4k
views
Forum: Discussion: Uploading terabytes of data to NCBI SRA
NCBI WGS archiving servers remote
updated 8 months ago by 142k • written 9 months ago by ▴ 130
0
votes
0
replies
591
views
Forum: I have a Master's and little experience in Bioinformatics - what would be the next best step?
career
updated 9 months ago by 43k • written 9 months ago by ▴ 10
1
vote
3
replies
806
views
Forum: Spaceranger missing spatial coordinates [Discussion]
Visium
updated 9 months ago by 142k • written 9 months ago by ▴ 550
11
votes
8
replies
1.5k
views
6 follow
Forum: How to write a review article in bioinformatics
article review
updated 8 months ago by 43k • written 9 months ago by ▴ 10
365
votes
58
replies
70k
views
44 follow
Forum: Recommend Your Favorite Bioinformatics Books
education books
updated 7 months ago by 43k • written 14.2 years ago by 100k
1
vote
2
replies
18k
views
Forum: Would you rather analyze a dataset with a strong, non-collinear batch effect, or a weak, collinear batch effect.
collinear latent batch-effect variable GLM
9 months ago by LauferVA 4.2k
0
votes
3
replies
3.9k
views
10 follow
Forum: Discussion question: Cutoff for SNP phylogeny
Phylogenetics SNP
written 17 months ago by ▴ 120
2
votes
3
replies
821
views
Forum: Purely analytic or in silico manuscripts that have significantly improved biological understanding
dry-lab
updated 10 months ago by 142k • written 10 months ago by 4.2k
0
votes
2
replies
1.3k
views
Forum: [Detailed Question] How to Normalize of Metagenomics Gene Abundances (with HMMs models)
normalization
updated 11 months ago by 10k • written 11 months ago by • 0
33
votes
23
replies
4.3k
views
8 follow
Forum: Is there a file format better suited for the era of pangenomics than the .vcf? What are its attributes?
VCF file-format genomics
updated 11 months ago by 22k • written 11 months ago by 4.2k
7
votes
8
replies
2.0k
views
Forum: Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind career
11 months ago by K • 0
2
votes
3
replies
888
views
Forum: Mapping a predicted sequence to a genome
predicted map alignment sequence
updated 11 months ago by ★ 27k • written 11 months ago by • 0
0
votes
0
replies
459
views
Forum: Recommendation sought for differential exon usage of a single gene
splicing differential-exon-usage
updated 11 months ago by 43k • written 11 months ago by ▴ 10
7
votes
4
replies
1.1k
views
Forum: [Meta] Use of AI
AI Artificial-Intelligence meta ChatGPT
updated 11 months ago by 43k • written 11 months ago by 4.2k
2
votes
2
replies
618
views
Forum: Colleges
Colleges india universities
updated 11 months ago by 43k • written 11 months ago by • 0
19
votes
15
replies
2.1k
views
6 follow
Forum: Cross out line in Biostars
meta
updated 12 months ago by 43k • written 6.0 years ago by 5.3k
103
votes
42
replies
31k
views
34 follow
Forum: List of cloud genomics companies
cloud-genomics
updated 5 weeks ago by 22k • written 10.5 years ago by ★ 3.6k
4
votes
5
replies
1.4k
views
Forum: I'm looking for a mentor in Bioinformatics
mentor teaching
updated 3 months ago by • 0 • written 13 months ago by • 0
10
votes
15
replies
2.2k
views
Forum: How should reference genome fasta files be distributed by UCSC?
reference-genome fasta freeze ucsc-genome-browser
updated 11 months ago by 22k • written 15 months ago by ★ 1.6k
5
votes
4
replies
1.4k
views
Forum: Best BAM viewer in 2022
sam bam
updated 11 months ago by 43k • written 17 months ago by ▴ 70
1.2k
votes
206
replies
60k
views
108 follow
Forum: What Are The Most Common Stupid Mistakes In Bioinformatics?
software
updated 11 months ago by ★ 1.4k • written 13.1 years ago by 22k
15
votes
13
replies
4.3k
views
8 follow
Forum: Does a PhD or work experience set you up better to do bioinformatics work in industry?
advice industry phd
updated 4 months ago by 3.9k • written 18 months ago by ▴ 30
3
votes
2
replies
869
views
Forum: From protein-protein interaction networks to..
workflow computational knowledge limitations
updated 11 months ago by 43k • written 23 months ago by ▴ 50
3
votes
1
reply
938
views
Forum: How to download multiple .gz files from Ensembl Protists database
wget protist ensembl
updated 3 months ago by ★ 1.7k • written 2.2 years ago by ▴ 870
17
votes
14
replies
3.4k
views
Forum: Asking for feedback on a Python library for computing alignments
alignment Python
updated 11 months ago by ▴ 220 • written 2.3 years ago by ▴ 60
0
votes
1
reply
779
views
Forum: What are the most important papers/methods in Genomics/Bioinformatics of 2021?
publications
updated 11 months ago by 43k • written 2.4 years ago by ★ 2.5k
12
votes
7
replies
7.3k
views
Forum: Differences between SMART-seq2, SMART-seq3, and 10x
cell smartseq UMIs single 10x
updated 8 weeks ago by ★ 6.0k • written 2.7 years ago by ▴ 70
0
votes
0
replies
525
views
Forum: Poll about a structured description of a tool, a pipeline
survey pipeline
updated 11 months ago by 43k • written 2.8 years ago by • 0
0
votes
2
replies
791
views
Forum: A new data analytics platform for next gen sequencing
next-gen-sequencing RNA-Seq
updated 3 months ago by 43k • written 3.4 years ago by • 0
8
votes
1
reply
7.3k
views
Forum: What are chromatin states ?
genome ChIP-Seq
3 months ago by rohitsatyam102 ▴ 870
2
votes
6
replies
3.1k
views
Forum: RIP CentOS, CentOS 8 to be EOL'd in 2021
centos linux-distro os
updated 11 months ago by 43k • written 3.4 years ago by 11k
0
votes
0
replies
931
views
Forum: MAGs annotation tools
annotation genome
updated 11 months ago by 43k • written 4.3 years ago by ▴ 50
4
votes
5
replies
1.3k
views
Forum: Is Bioinformatics enough? Is it taken seriously?
career
updated 11 months ago by 43k • written 3.5 years ago by • 0
1
vote
2
replies
855
views
Forum: bioinformatics career choice - could use guidance
career
updated 11 months ago by 43k • written 3.5 years ago by • 0
19
votes
7
replies
1.3k
views
9 follow
Forum: DNA in pixels
genome alignment sequencing
updated 11 months ago by 43k • written 3.5 years ago by ▴ 30
0
votes
1
reply
592
views
Forum: What are the best online tutoring sites for biology help?
Biology
updated 11 months ago by 43k • written 3.5 years ago by • 0
4
votes
1
reply
733
views
Forum: Help with Bioinformatics Course
cancer
updated 11 months ago by 43k • written 3.7 years ago by • 0
0
votes
0
replies
711
views
Forum: Interview: Identifying the allelic expression of INDEL mutations
SNP RNA-Seq alignment
updated 11 months ago by 43k • written 3.6 years ago by • 0
73
votes
14
replies
4.3k
views
12 follow
Forum: Things you wish you knew when entering the bioinformatics field
pitfalls advice
updated 11 months ago by 43k • written 3.7 years ago by ★ 16k
0
votes
4
replies
1.0k
views
Forum: Genes inhibiting each other's expression
Gene-expression
updated 11 months ago by 43k • written 3.7 years ago by ▴ 60
9
votes
6
replies
1.5k
views
Forum: How to start my career in Bioinformatics
career
updated 11 months ago by 43k • written 3.7 years ago by ▴ 10
355 results • Page 2 of 8
Recent Votes
Answer: Q: GenomeScope input and how to interpret the results
Answer: How to find tandem duplications pattern in a DNA sequence
A: How To Split One Big Sequence File Into Multiple Files With Less Than 1000 Seque
C: Snakemake vs. Nextflow: strengths and weaknesses
Answer: workflow management system : WDL, CWL, Ruffus, SnakeMake, etc
Sequence alignment on split read event such as inversion, duplication and complex nested events.
ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
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Recent Replies
Comment: GO analysis: p-value range by Matthias Zepper 4.6k
It is just a warning that you add a new scale to a ggplot2 plot, that already has an existing one, which will get replaced. Nothing to worr…
Comment: GO analysis: p-value range by marco.barr ▴ 130
If you write me the code you used I can help you more
Comment: GO analysis: p-value range by sooni ▴ 20
When I run the code, the following message appears: Scale for y is already present. Adding another scale for y, which will replace…
Comment: Why most genes have high padj values by mnx0723 • 0
In the case of other samples, the total number of genes is at least 3,000 more than that one, but it seems to be a relatively small number.…
Comment: How to hide label in layout file of MCscan (python version) by jinyi • 0
Command line is as follows: python -m jcvi.graphics.synteny Cs.Cm.i1.blocks Cs_Cm.bed layout2.txt
Comment: Add stats to the plot by marco.barr ▴ 130
Thank you, it seems to be clearer. Your Condition already has two factorial levels. You can replace these names in groups 1 and 2. da…
Comment: Error in using BioSampleParser tool: subscript out of bounds by marco.barr ▴ 130
Hi, I also had the same problem. If you check its github page there have been no releases for many years and these errors cannot be fixed. …
Comment: Add stats to the plot by Ghada • 0
Thanks, thats really helpful ![enter image description here][1] ![enter image description here][2] [1]: /media/images/0470f3dc-5945-…
Comment: PCA Visualization error in R by marco.barr ▴ 130
SNPRelate is an R package that is able to read from VCF files directly and perform PCA and IBD/IBS. See the documentation for details in Bi…
Comment: Why most genes have high padj values by ATpoint 82k
788 differential genes is a lot. What is the problem?
Comment: Why most genes have high padj values by mnx0723 • 0
Sorry, I made edits.
Comment: Why most genes have high padj values by Pierre Lindenbaum 161k
Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the cod…
Comment: GO analysis: p-value range by marco.barr ▴ 130
Try adding: `scale_y_continuous(breaks=seq(0, max_count, by=0.05))`
Comment: Functional enrichment analysis for unique gene IDs by ATpoint 82k
If these genes do not have a symbol then it is utterly unlikely that anyone has looked at their function. I would get their Ensembl IDs and…
Comment: Add stats to the plot by marco.barr ▴ 130
The error is likely due to the fact that the structure of your data in data4.ts and data2.ts may not contain the Condition values. The grou…
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