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7
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5.8k
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News: Free HiSeq X Ten human genome fastq test data
HiSeq-X-Ten Human-genome Fastq next-gen
updated 2.4 years ago by 43k • written 9.8 years ago by ★ 1.8k
21
votes
7
replies
7.8k
views
News: Survey: Rna-Seq Analysis For Differential Gene/Transcript Expression [Updated With Results]
transcript RNA-seq gene
updated 15 months ago by 43k • written 11.5 years ago by ▴ 250
10
votes
7
replies
2.9k
views
News: Linux for Biologists e-book (free to read online)
linux python galaxy conda virtual-machine
2.6 years ago by vimalkvn ▴ 320
25
votes
7
replies
2.8k
views
6 follow
News: Who qualifies to be a bioinformatician?
resume bioinformatician vc
updated 22 months ago by 43k • written 9.1 years ago by 161k
25
votes
7
replies
6.3k
views
News: Pubmed Commons : A System That Enables Researchers To Share Their Opinions About Scientific Publications
ncbi pubmed
updated 14 months ago by 43k • written 10.6 years ago by 161k
24
votes
7
replies
4.5k
views
News: #Bioinformatics Crowdcoding
crowd-coding
updated 14 months ago by 43k • written 10.8 years ago by 161k
6
votes
7
replies
4.3k
views
News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
20 months ago by Rory Stark ★ 2.0k
2
votes
6
replies
2.9k
views
News: Master in integrated systems biology / Luxembourg
systems-biology Masters-course
updated 12 months ago by 43k • written 6.8 years ago by ▴ 130
8
votes
6
replies
1.5k
views
News: Illumina to Acquire Pacific Biosciences
pacbio illumina
updated 12 months ago by 43k • written 5.5 years ago by 100k
9
votes
6
replies
2.2k
views
News: No more hidden solutions in bioinformatics
precision-medicine genome-sequencing
updated 16 months ago by 43k • written 9.0 years ago by ★ 1.2k
32
votes
6
replies
13k
views
7 follow
News: Ncbi Releases Entrez Direct, The Entrez Utilities On The Unix Command Line
ncbi genbank pubmed command-line entrez
updated 14 months ago by 43k • written 10.3 years ago by 161k
1
vote
6
replies
1.2k
views
News: Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor FlowCytometry R
updated 16 months ago by ▴ 100 • written 17 months ago by ★ 2.5k
3
votes
6
replies
2.7k
views
News: Brief Getting Started with Broad Firecloud tutorial posted
RNA-Seq
updated 13 months ago by 43k • written 7.9 years ago by 26k
8
votes
6
replies
17k
views
News: Bioinformatics PhD Programs in the US
education PhD
updated 12 months ago by 43k • written 6.5 years ago by ▴ 70
8
votes
6
replies
4.0k
views
News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 15 months ago by 43k • written 11.3 years ago by 11k
14
votes
6
replies
7.1k
views
News: FINAL CALL: NGS Workshop - A Beginner's Guide to NGS Data Analysis (2 last seats)
NGS RNA-Seq workshop
updated 17 months ago by 43k • written 8.9 years ago by 11k
17
votes
6
replies
9.0k
views
News: Final registration deadline: September 15th - Bioinformatics Hands-On NGS Data Analysis Workshops 2014
methylation RNA-seq
updated 14 months ago by 43k • written 10.1 years ago by 11k
1
vote
5
replies
1.2k
views
News: Cancer Genomics course - 2 seats left
Genomics Cancer-Genomics R
updated 15 months ago by 43k • written 16 months ago by ★ 2.5k
3
votes
5
replies
2.3k
views
News: Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
kegg gene-enrichment cancer gene-ontology
updated 13 months ago by 43k • written 7.7 years ago by 7.5k
0
votes
5
replies
2.6k
views
News: Workshop: Data manipulation and visualization with Python
next-gen genome SNP sequence
updated 13 months ago by 43k • written 7.5 years ago by ★ 2.5k
9
votes
5
replies
10k
views
8 follow
News: Online course: Learn Bioinformatics in 100 hours
biostars online-course
updated 15 months ago by 43k • written 6.7 years ago by 100k
9
votes
5
replies
3.7k
views
News: SAMTOOLS 1.4 released
samtools
updated 12 months ago by 43k • written 7.2 years ago by 161k
14
votes
5
replies
3.4k
views
News: Science Article On Social Influence Bias On Voting Patterns ("Herding") With Impact On Biostar.
meta biostars
updated 15 months ago by 43k • written 10.8 years ago by 54k
7
votes
5
replies
2.6k
views
News: Physalia-Course: Introduction to Linux and workflows for biologists (Berlin)
next-gen Unix Assembly alignment
updated 12 months ago by 43k • written 7.2 years ago by ★ 2.5k
3
votes
5
replies
1.3k
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 8 months ago by ▴ 120 • written 18 months ago by ▴ 30
0
votes
5
replies
2.0k
views
News: Ashg 2012 Biostar Meetup
ASHG
updated 15 months ago by 43k • written 11.5 years ago by 12k
0
votes
5
replies
1.6k
views
News: LAST CALL - 'Introduction to NGS Data Analysis' course in Berlin, October 8-10 2018
NGS training RNA-Seq DNA-Seq
updated 12 months ago by 43k • written 5.9 years ago by 11k
33
votes
5
replies
3.8k
views
News: FINAL CALL: Epigenetics Workshop - DNA Methylation Data Analysis (some last seats available)
Epigenetics Workshop Bisulfite-Sequencing
updated 13 months ago by 43k • written 8.0 years ago by ▴ 460
9
votes
5
replies
3.1k
views
News: The NIH Software Discovery Index | We invite your comments
NIH software-catalog
updated 2.3 years ago by 43k • written 9.6 years ago by 26k
3
votes
5
replies
2.3k
views
News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
9 months ago by Alexander ▴ 220
4
votes
5
replies
2.8k
views
News: Kover will provide support via Biostars
kmer kover machine-learning
updated 13 months ago by 43k • written 8.0 years ago by ▴ 90
9
votes
5
replies
8.8k
views
News: A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg api
updated 15 months ago by 43k • written 11.5 years ago by ▴ 50
6
votes
5
replies
5.3k
views
News: NCBI MagicBlast ( Short read mapper )
blast ncbi short-read mapper hts
updated 13 months ago by 43k • written 7.7 years ago by 161k
9
votes
4
replies
3.7k
views
News: Conference Announcement - Camda 2013
conference classification
updated 15 months ago by 43k • written 11.4 years ago by ▴ 240
10
votes
4
replies
1.8k
views
News: 3rd Berlin Summer School in NGS Data Analysis (2 seats just became available)
NGS RNA-Seq DNA-Seq
updated 11 months ago by 43k • written 5.3 years ago by 11k
19
votes
4
replies
2.5k
views
News: How to analyze NGS data: An overview of nine different IT solutions
NGS RNA-Seq DNA-Seq
updated 13 months ago by 43k • written 7.6 years ago by 11k
1
vote
4
replies
2.1k
views
News: webserver of TCGA data www.tcgaportal.org
genome RNA-Seq TCGA gene
updated 12 months ago by 43k • written 6.0 years ago by ▴ 40
5
votes
4
replies
1.9k
views
News: 2nd International Conference on Pediatric Oncology and Pediatric Medicine
gene
updated 13 months ago by 43k • written 7.2 years ago by • 0
7
votes
4
replies
2.7k
views
News: Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python training
updated 15 months ago by 43k • written 11.1 years ago by 11k
9
votes
4
replies
2.5k
views
7 follow
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 9 months ago by 43k • written 2.7 years ago by ★ 2.5k
3
votes
4
replies
2.4k
views
News: Training in Metagenomics Data Analysis @NIH, USA, Nov 14 - 17, 2017
metagenomics microbiome training
updated 13 months ago by 43k • written 7.6 years ago by ▴ 140
6
votes
4
replies
1.7k
views
News: Genomic variation course at the EBI - Updated
Ensembl 1000Genomes snps variation
updated 13 months ago by 43k • written 8.2 years ago by 23k
4
votes
4
replies
1.9k
views
News: 12th International Conference on Advancements in Bioinformatics and Drug Discovery
genome Computational-Biology
updated 12 months ago by 43k • written 6.1 years ago by ▴ 20
10
votes
4
replies
2.7k
views
News: Ensembl 77 is out
ensembl
updated 2.3 years ago by 43k • written 9.6 years ago by 23k
10
votes
4
replies
1.0k
views
News: Good morning
good morning
updated 20 months ago by 100k • written 20 months ago by 88k
9
votes
4
replies
1.6k
views
News: Human Cell Atlas Data Coordination Platform Data Release Questionaire
RNA-Seq
updated 12 months ago by 43k • written 6.2 years ago by ★ 1.8k
2
votes
4
replies
2.0k
views
News: Reminder: Igb Tutorial Starts In 30 Minutes
visualization genome-browser RNA-seq
updated 14 months ago by 43k • written 10.7 years ago by ★ 2.4k
1
vote
4
replies
1.5k
views
News: Spring School for RNA-seq Sequence Analysis
RNA-Seq genome sequence sequencing
updated 13 months ago by 43k • written 7.3 years ago by ▴ 10
0
votes
4
replies
1.9k
views
News: What NGS courses would you like us to prepare for 2016? (one week left)
NGS Survey Workshop
updated 21 months ago by 43k • written 8.4 years ago by 11k
14
votes
4
replies
3.4k
views
News: FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq next-gen NGS
updated 22 months ago by 43k • written 8.3 years ago by 11k
1,000 results • Page 2 of 20
Recent Votes
C: Snakemake vs. Nextflow: strengths and weaknesses
Answer: workflow management system : WDL, CWL, Ruffus, SnakeMake, etc
Sequence alignment on split read event such as inversion, duplication and complex nested events.
ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
Comment: Add stats to the plot
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
The Biostar Handbook. A bioinformatics e-book for beginners.
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Recent Replies
Comment: BiomartException: Query ERROR for existing dataset in BioMart by Luqman • 0
I am using *pybiomart* which has Server inplace of BiomartServer, I used that as per above but still getting the same error. Also, when I a…
Comment: Blastn, need help to increase speed by m13113153781 • 0
mmseq2 is indeed a good acceleration solution, but its index files require ~ 6 T space....
Answer: seqtk subseq in.fastq list.txt > out.fastq not extracting full sequence from by KHURRAM SHAHZAD • 0
Thank you it works
Answer: Add stats to the plot by Ghada • 0
I think this is what caused the error. we do not have group 1 and 2 in the statistical test results???? ![enter image description here][…
Answer: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data? by Bibi • 0
@atpoint thanks you for your timely response. Can someone else shed light if we can compare the trend of DEGs using the scRNA and Bulk RNA…
Comment: Add stats to the plot by GenoMax 142k
Please use `101010` to format `code` so it is represented in monospace font. I have done this for you now.
Answer: is there a tool to recover corrupted fastq files by Tommaso • 0
You may also want to give a try to **FastqWiper** (https://github.com/mazzalab/fastqwiper)
Comment: Add stats to the plot by Ghada • 0
Thanks. That helpful. I am getting this error data4_test <- data4.ts%>% ungroup() %>% t.test(data =.,value ~ Condition)%>% + …
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data? by ATpoint 82k
I cannot comment here. You are asking why results between two experiments are different. I do not know without seeing the data.
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data? by Bibi • 0
Thank you so much for this insight. I just want to clarify another point here. I have used scRNA seq data from mice mammary epithelial cell…
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File by Pierre Lindenbaum 161k
> Cannot read non-existent file: file:///local/home/User/VCF_Filtering/biostar.code your file doesn't exist, is at the wrong place etc.
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File by ajbarrett98 • 0
Hi Pierre, I am attempting to run this code and am running into this error: (jvar) $ jvarkit vcffilterjdk -f biostar.code Dart_VCF2_Or…
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data? by ATpoint 82k
I cannot give a precise answer, as ML is not my field, but generally, why don't you apply the method to pseudobulks of the exact single-cel…
Answer: geom_bar issue in ggplot2 with xlim() by ATpoint 82k
https://stackoverflow.com/questions/10365167/geom-bar-bars-not-displaying-when-specifying-ylim
Comment: What marks a De-Novo Genome assembly as FAILED? by Umer ▴ 50
Yes. We are sequencing 45 different samples with illumina. 12 of these are also going to be sequenced with Nanopore (for hybrid assembly). …
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