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News: Course - RNAseq in non-model organisms
Pacbio RNA-seq Nanopore
updated 5 months ago by 43k • written 6 months ago by ★ 2.5k
0
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0
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346
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News: Next-Generation Sequencing Data Analysis: A Practical Introduction (Nov 29 – Dec 1 in Munich, Germany)
RNAseq DNAseq NGS Workshop
6 months ago by Lars ★ 1.0k
0
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0
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334
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News: Course - Computational Tumor Evolution
Tumor-Evolution Cancer-Genomics
updated 5 months ago by 43k • written 6 months ago by ★ 2.5k
0
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3
replies
1.5k
views
News: :: FINAL CALL :: A Practical Introduction to NGS Data Analysis (Nov 29 - Dec 1, 2023 in Munich, Germany) - only 2 seats left
DNA-Seq NGS RNA-Seq Workshop
6 months ago by David Langenberger 11k
0
votes
0
replies
371
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News: Course: Genome Assembly using Oxford Nanopore Sequencing
Genome-Assembly Nanopore
updated 5 months ago by 43k • written 6 months ago by ★ 2.5k
0
votes
0
replies
329
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News: Genemod - Lab Management Software
lab-management-software research
updated 6 months ago by 43k • written 6 months ago by • 0
1
vote
0
replies
327
views
News: course - Advanced Python Programming
Python-Programming
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
4
votes
2
replies
3.0k
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News: New ebook: From cell line to Command line to learn computational biology
unix snakemake computational-biology RNA-seq
6 months ago by Ming Tommy Tang ★ 3.9k
0
votes
0
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419
views
News: GWAS course
R GWAS
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
votes
0
replies
349
views
News: Course - Introduction to Bayesian Data Analysis
R Statistics Bayesian Regression-Modeling
updated 5 months ago by 43k • written 6 months ago by ★ 2.5k
3
votes
0
replies
583
views
News: gnomAD v4 released
gnomad
6 months ago by Pierre Lindenbaum 161k
0
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0
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345
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News: Course - Introduction to Machine Learning in R
R Statistical-Learning Omics Machine-Learning
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
votes
0
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429
views
News: Spatial Omics and Multiplexed Image Analysis course
Spatial-Omics Multiplexed-Image-Analysis
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
votes
0
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364
views
News: Virtual de novo RNA-seq (transcriptomics) Workshop: November 13-16, 2023
workshop RNA-seq transcriptomics
updated 6 months ago by 43k • written 6 months ago by ▴ 10
1
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0
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404
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News: course - Comparative Genomics
Comparative-Genomics
updated 6 months ago by 43k • written 6 months ago by ★ 2.5k
0
votes
0
replies
420
views
News: Online course Python Machine Learning in Biology, November 16, 2023
machine-learning python course
updated 6 months ago by 43k • written 6 months ago by • 0
122
votes
44
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11k
views
24 follow
News: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
meta biostars
updated 6 months ago by 43k • written 11.5 years ago by 100k
0
votes
0
replies
393
views
News: Bioinformatics Phoenix
web-server
updated 6 months ago by 43k • written 7 months ago by • 0
1
vote
0
replies
334
views
News: Course - Developing R/Bioconductor Packages for Genomics
R package-development Genomics Bioconductor
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
replies
348
views
News: Course -Metabarcoding in Microbial Ecology
R Qiime2 Microbial-Ecology Metabarcoding
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
replies
373
views
News: Become a Bioinformatics Pro: Easy Understanding Starts Here
Structural-Bioinformatics
updated 7 months ago by 43k • written 7 months ago by • 0
0
votes
0
replies
396
views
News: Course - Flow Cytometry analysis with R/Bioconductor
R Flow-Cytometry Bioconductor
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
1
reply
1.2k
views
News: FINAL CALL - Workshop - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (November 8-10, 2023 in Berlin)
workshop RNA-Seq scRNA-Seq single-cell
7 months ago by David Langenberger 11k
0
votes
1
reply
861
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News: FINAL CALL: Online Course - A Practical Introduction to NGS Data Analysis - October 23-25, 2023
DNA-seq Workshop RNA-seq
7 months ago by David Langenberger 11k
0
votes
0
replies
428
views
News: Course - Metabolomics in R/Bioconductor
R Data-Analysis Metabolomics Bioconductor
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
13
votes
9
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2.7k
views
7 follow
News: Inviting NEW Biostars moderators to join Biostars slack channel
slack moderator
7 months ago by GenoMax 142k
0
votes
0
replies
384
views
News: Cellosaurus release 47 is available
cellosauraus cell-line biocuration knowledgebase
updated 7 months ago by 43k • written 7 months ago by ▴ 120
0
votes
0
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345
views
News: Course: Seascape Genomics in R course
R GEA Seascape-Genomics Adaptation-Genomics
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
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359
views
News: Course :MACHINE LEARNING - A HANDS-ON INTRODUCTION IN R
R Statistical-Learning Omics Machine-Learning
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
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489
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News: Course - Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis GSEA R Genomics Bioconductor
updated 7 months ago by 43k • written 7 months ago by ★ 2.5k
0
votes
0
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373
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News: New NCBI Datasets APIs to Replace Old Ones
NCBI API Datasets
7 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
415
views
News: RADseq data analysis course
RADseq Phylogenomics Stacks Population-Genomics
7 months ago by carlopecoraro2 ★ 2.5k
0
votes
1
reply
637
views
News: EMBL-EBI virtual course | Introduction to RNA-seq and functional interpretation
RNA-seq
updated 8 months ago by 43k • written 8 months ago by • 0
1
vote
0
replies
421
views
News: Online Training - Bioinformatics Pipeline Development with Nextflow (November 15-17, 2023)
nextflow automation pipeline development
8 months ago by David Langenberger 11k
2
votes
1
reply
483
views
News: Successful NCBI NIAID Codeathon on VCF Files in SARS-CoV-2 Genomics
NCBI Codeathon
updated 7 months ago by 10k • written 8 months ago by ▴ 410
0
votes
0
replies
372
views
News: Research Breakthrough in Identifying Viral Escape Mutations for Improved Therapeutic Design
sequence-analysis sars-cov-2 spike-protein
updated 8 months ago by 43k • written 8 months ago by • 0
0
votes
0
replies
361
views
News: Course: Data Manipulation and Visualisation with Python
Python Data-Visualization Data-Manipulation
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
0
votes
2
replies
944
views
News: The Practice of RADseq: Population Genomics Analysis with Stacks (RADS02) Early bird deadline approaching - 20th September
population-genomics radseq stacks
updated 8 months ago by ★ 1.7k • written 8 months ago by ▴ 110
0
votes
0
replies
353
views
News: Course - GLMMs in R
GLMM Mixed-Models
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
0
votes
0
replies
367
views
News: Introduction to Nextflow (2 seats left)
Nextflow Workflow Reproducibility
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
0
votes
0
replies
426
views
News: Genomic Prediction course
Genomic-Prediction GWAS
updated 7 months ago by 43k • written 8 months ago by ★ 2.5k
0
votes
0
replies
466
views
News: course - Population Genomics Using Ancient DNA Data
Genomics aDNA Population-Genomics
updated 7 months ago by 43k • written 8 months ago by ★ 2.5k
3
votes
5
replies
1.3k
views
News: Ensembl Release 104 and newer GTF files no longer have genes sorted by position
Ensembl GTF
updated 8 months ago by ▴ 120 • written 18 months ago by ▴ 30
0
votes
0
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402
views
News: NCBI ClinVar XML update to accommodate somatic variants
SNP XML ClinVar NCBI
4 months ago by PeterC_NCBI ▴ 410
0
votes
0
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314
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News: Workshop on Virtual Screening on Drug Discovery from scratch (15-16 September, 2023 : 07.00 - 09.00 PM IST)
workshop virtual-screening
updated 7 months ago by 43k • written 8 months ago by • 0
0
votes
0
replies
345
views
News: RNAseq data analysis with R/Bioconductor
R RNA-seq Bioconductor
updated 7 months ago by 43k • written 8 months ago by ★ 2.5k
0
votes
0
replies
358
views
News: Course - RNAseq in non-model organisms
R Differential-Expression-Analysis RNA-seq Bioconductor
updated 7 months ago by 43k • written 8 months ago by ★ 2.5k
4
votes
2
replies
613
views
News: Standalone NCBI ClusteredNR database now available for download
ClusteredNR NCBI standalone BLAST
8 months ago by PeterC_NCBI ▴ 410
0
votes
0
replies
364
views
News: Virtual Variant Detection Workshop: September 11-14, 2023
tutorial detection genomics workshop variant
8 months ago by mia.nahom ▴ 10
0
votes
0
replies
327
views
News: Introduction to Deep Learning for Biologists course
Python Deep-Learning Machine-Learning
updated 8 months ago by 43k • written 8 months ago by ★ 2.5k
1,000 results • Page 3 of 20
Recent Votes
C: Snakemake vs. Nextflow: strengths and weaknesses
Answer: workflow management system : WDL, CWL, Ruffus, SnakeMake, etc
Sequence alignment on split read event such as inversion, duplication and complex nested events.
ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
Comment: Add stats to the plot
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
The Biostar Handbook. A bioinformatics e-book for beginners.
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Scholar to Pierre Lindenbaum 161k
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Recent Replies
Comment: BiomartException: Query ERROR for existing dataset in BioMart by Luqman • 0
I am using *pybiomart* which has Server inplace of BiomartServer, I used that as per above but still getting the same error. Also, when I a…
Comment: Blastn, need help to increase speed by m13113153781 • 0
mmseq2 is indeed a good acceleration solution, but its index files require ~ 6 T space....
Answer: seqtk subseq in.fastq list.txt > out.fastq not extracting full sequence from by KHURRAM SHAHZAD • 0
Thank you it works
Answer: Add stats to the plot by Ghada • 0
I think this is what caused the error. we do not have group 1 and 2 in the statistical test results???? ![enter image description here][…
Answer: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data? by Bibi • 0
@atpoint thanks you for your timely response. Can someone else shed light if we can compare the trend of DEGs using the scRNA and Bulk RNA…
Comment: Add stats to the plot by GenoMax 142k
Please use `101010` to format `code` so it is represented in monospace font. I have done this for you now.
Answer: is there a tool to recover corrupted fastq files by Tommaso • 0
You may also want to give a try to **FastqWiper** (https://github.com/mazzalab/fastqwiper)
Comment: Add stats to the plot by Ghada • 0
Thanks. That helpful. I am getting this error data4_test <- data4.ts%>% ungroup() %>% t.test(data =.,value ~ Condition)%>% + …
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data? by ATpoint 82k
I cannot comment here. You are asking why results between two experiments are different. I do not know without seeing the data.
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data? by Bibi • 0
Thank you so much for this insight. I just want to clarify another point here. I have used scRNA seq data from mice mammary epithelial cell…
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File by Pierre Lindenbaum 161k
> Cannot read non-existent file: file:///local/home/User/VCF_Filtering/biostar.code your file doesn't exist, is at the wrong place etc.
Comment: Is it Possible to "Merge" data from Replicates within a VCF SNP File by ajbarrett98 • 0
Hi Pierre, I am attempting to run this code and am running into this error: (jvar) $ jvarkit vcffilterjdk -f biostar.code Dart_VCF2_Or…
Comment: scRNA-seq data trained model can be used for predictions on bulk RNA-seq data? by ATpoint 82k
I cannot give a precise answer, as ML is not my field, but generally, why don't you apply the method to pseudobulks of the exact single-cel…
Answer: geom_bar issue in ggplot2 with xlim() by ATpoint 82k
https://stackoverflow.com/questions/10365167/geom-bar-bars-not-displaying-when-specifying-ylim
Comment: What marks a De-Novo Genome assembly as FAILED? by Umer ▴ 50
Yes. We are sequencing 45 different samples with illumina. 12 of these are also going to be sequenced with Nanopore (for hybrid assembly). …
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