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1,000 results • Page
2 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
6
replies
425
views
Differential Expression Analysis using DESeq2 in R
deseq2
R
updated 5 days ago by
swbarnes2
14k • written 5 days ago by
Erina
• 0
1
vote
3
replies
282
views
TaxID mapping file
annotation
blobtools
RNAseq
decontamination
transcriptomes
3 days ago by
Lada
▴ 30
1
vote
0
replies
147
views
.lgen file has 3+ different alleles
PLINK
lgen
ped
updated 2 days ago by
zx8754
11k • written 5 days ago by
Emilie
▴ 10
0
votes
0
replies
138
views
vcf procesing for ML antigen prediction
formats
vcf
fastaq
HLA_imputation
HLA_typing
5 days ago by
Javier
• 0
0
votes
1
reply
233
views
Extracting mutation status from MAF files - TCGA
TCGA
maf
mutation
updated 4 days ago by
Thanujay S
• 0 • written 5 days ago by
yahn
• 0
0
votes
0
replies
130
views
IGV interpretation for ATM gene for chromosome 11 for a deceased partient suspected of having melanoma
genetic
Variant
predisposition
5 days ago by
mikemakaveli1
• 0
2
votes
2
replies
215
views
Raw counts using stringtie
stringtie
RNA-seq
updated 5 days ago by
GenoMax
142k • written 5 days ago by
ahmad.sajad4541
• 0
0
votes
0
replies
131
views
Modify plot R mtDNA indel
plot
mtDNA
R
5 days ago by
marco.barr
▴ 90
0
votes
0
replies
321
views
Re-Import modified clusterProfiler's GSEA result from .csv for graphical output-generation (i.e. cnetplot, heatplot)
enrichplot
graphical_output
GSEA
clusterProfiler
5 days ago by
NorbertK
• 0
0
votes
2
replies
248
views
Downloading older version of a tool
Alignment
tools
4 days ago by
Ruqaiya
• 0
0
votes
0
replies
147
views
Generating illumina interops SAV like plots for multiqc reports on HPC
visualization
illumina
ngs
sequencing
5 days ago by
rustykb
▴ 20
3
votes
5
replies
286
views
Generating mpileup file using samtools
mpileup
samtools
updated 5 days ago by
Joe
21k • written 5 days ago by
Ruqaiya
• 0
2
votes
3
replies
290
views
Help with choosing a model species for Augustus for a de novo assembled genome.
augustus
annotation
assembly
genome
updated 5 days ago by
dthorbur
★ 1.9k • written 5 days ago by
Vijith
▴ 30
0
votes
0
replies
146
views
SIngle cell analysis
Seurat
scRNA-seq
Harmony
DoubletFinder
Merge
5 days ago by
Jeyong
• 0
0
votes
0
replies
134
views
Empty table plot using plotGseaTable()
FGSEA
5 days ago by
Chris
▴ 280
3
votes
8
replies
6.6k
views
7 follow
GATK genomicsDBimport intervals for WGS
gatk
genomicsdbimport
updated 6 days ago by
Sd
• 0 • written 5.1 years ago by
Nicolas Rosewick
11k
0
votes
2
replies
200
views
Base Quality Score Recalibration with different reference genome
SNPs
GATK
BQSR
RNA-seq
6 days ago by
dtnondorf
• 0
1
vote
7
replies
521
views
Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA2 - where to go from here?
nf-core
16S
amplicon
dada2
ampliseq
updated 1 day ago by
Chris Dean
▴ 400 • written 6 days ago by
sovrappensiero
▴ 90
3
votes
8
replies
516
views
How to access TCGA samples that were treated with a specific drug?
TCGA
RNA-seq
2 days ago by
Qroid
▴ 40
0
votes
1
reply
152
views
Provean help
variant
Provean
updated 6 days ago by
Mensur Dlakic
★ 27k • written 6 days ago by
Arun Sai Kumar
• 0
0
votes
0
replies
101
views
Use of annotation of integrated Seurat object in single sample
Seurat
6 days ago by
Bine
▴ 60
0
votes
1
reply
229
views
Subsetting and merging back Seurat Object brings different results
Seurat
6 days ago by
Bine
▴ 60
1
vote
1
reply
144
views
Discrepancy in read counts from fastq
downsampling
fastq
updated 6 days ago by
Ram
43k • written 6 days ago by
marco.barr
▴ 90
0
votes
0
replies
98
views
Successfully identified and Masked rpeats using RM. What Next?
sequence
annotation
repeatmasker
illumina
assembly
6 days ago by
Vijith
▴ 30
0
votes
0
replies
100
views
Combining Methylation Microarray data from different platforms
Microarray
DNA
EPIC
450K
Methylation
6 days ago by
James
▴ 10
0
votes
1
reply
590
views
Basic stats in hierfstat
Fst
stats
hierfstat
updated 6 days ago by
mdav
• 0 • written 18 months ago by
Zoe
• 0
1
vote
3
replies
245
views
Odd alignment question/finding
Alignment
updated 5 days ago by
barslmn
★ 2.1k • written 6 days ago by
poordumbsillyidiot
• 0
0
votes
1
reply
210
views
GATK won't produce figures while analyzing covariates to generate 'recal_plots.pdf'
GATK
recalibration
updated 7 days ago by
GenoMax
142k • written 7 days ago by
mgranada3
▴ 30
0
votes
0
replies
102
views
Tassel 5 GBS: GBSSeqToTagDBPlugin producing empty database
GBS
Tassel5
7 days ago by
meck
• 0
0
votes
0
replies
126
views
Looking for the best way to interpret these data
RNA-seq
ontology
GO
updated 7 days ago by
Ram
43k • written 7 days ago by
Oscar
▴ 10
0
votes
1
reply
154
views
Mutect2 for mitochondria variant discovery
mutect2
mitochondria
updated 7 days ago by
Ram
43k • written 7 days ago by
ernestine.kubi
• 0
0
votes
0
replies
107
views
Tools to circularise the ion torrent bacterial genome assembly
iontorrent
bacteria
circularise
7 days ago by
VITALA
• 0
1
vote
2
replies
259
views
POSSUM not working due to incompatible pssm file
fasta
pse-pssm
pssm
POSSUM
6 days ago by
rianna.collins
• 0
0
votes
1
reply
194
views
Alternatives to metanalyisis. P integration. Horiztonal integration RNA-seq
rna-seq
updated 7 days ago by
i.sudbery
19k • written 8 days ago by
Edmond
• 0
0
votes
0
replies
151
views
What open-source tools can determine the coverage/completion of a pathway based on EC numbers?
metagenomics
metacyc
enzyme
pathway
genomics
8 days ago by
O.rka
▴ 720
0
votes
1
reply
685
views
after selecting specific GO terms to plot, cneplot is not showing any color for genes, GO terms and only showing lines without nodes.
cneplot
updated 7 days ago by
Ram
43k • written 8 days ago by
Dr Huma Naz
• 0
0
votes
5
replies
383
views
Telescope issue
Telescope
RNA-seq
updated 7 days ago by
GenoMax
142k • written 8 days ago by
eleven11
• 0
1
vote
1
reply
239
views
Adjust pvalue in R with different approach give me all different outcome
statistics
R
p-value
updated 8 days ago by
Ram
43k • written 8 days ago by
Jonathan Yoou
▴ 60
1
vote
2
replies
299
views
Minimum RAM and Storage requirement for creating PSSM using ncbi-blast-2.2.30+-x64-linux
blast
pssm
7 days ago by
Nafi
• 0
1
vote
3
replies
291
views
What does 'bundle_uuid' refer to in this metadata sheet?
SRA
illumina
GEO
metadata
updated 8 days ago by
GenoMax
142k • written 8 days ago by
jeffrey.maurer.informatics
• 0
0
votes
2
replies
229
views
RNA editing sites based on DNA seq and RNA seq
RNA-editing
1 day ago by
Ahiad Chen Zion
• 0
0
votes
0
replies
129
views
Somatic variant calling with Mutect2 using 2 matched-normals for one sample
cancer
mutect
variant-calling
GATK
somatic-variants
updated 8 days ago by
Ram
43k • written 8 days ago by
Alexandros
• 0
0
votes
1
reply
176
views
unable to get feature count results
featureCounts
updated 8 days ago by
Ram
43k • written 8 days ago by
Ravita
• 0
0
votes
3
replies
297
views
KEGG Pathways
r
RNA-seq
updated 8 days ago by
Ram
43k • written 8 days ago by
Sudip
• 0
0
votes
0
replies
136
views
Seurat object reductions (PCA, UMAP,..) after subsetting data
Seurat
8 days ago by
Bine
▴ 60
1
vote
2
replies
230
views
Need help for downloading arabdopsis thaliana reference genome fasta file and gtf file
Arabidopsis-thaliana
gtf
reference-genome
updated 8 days ago by
Ram
43k • written 8 days ago by
Ravita
• 0
3
votes
3
replies
226
views
Gene Specific coverage from WGS data
linux
WGS
Bioinformatics
SARS
CoV2
1 day ago by
Adyasha
• 0
0
votes
0
replies
116
views
human gut metagenome taxonomy profile table and KO profile table from big cohort
metagenome
gut
human
8 days ago by
fanglujing
▴ 60
0
votes
0
replies
136
views
Are some metagenomes too complex for MAGs?
metagenomics
metagenome
MAGs
assembly
9 days ago by
Jacob
• 0
0
votes
1
reply
186
views
Differential Accessibility
DiffBind
updated 9 days ago by
Ram
43k • written 9 days ago by
Shloka
• 0
1,000 results • Page
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Difference between Pysam Pileup and Fetch
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Comment: Where can I download some example BAM files?
Where can I download some example BAM files?
Verify if all the components of a pathway are present in a genomes
removeBatchEffect explained using base R linear models
How to get number of characters (nucleotides) in fasta file
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