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344
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Answer:
Answer: Overlapping Ranges within Granges object
1 day ago by
Alex Reynolds
35k
2
votes
1
reply
756
views
Answer:
Answer: Create a new bed file with all pairwise combinations between two other bed files
18 days ago by
Alex Reynolds
35k
1
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0
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329
views
Answer:
Answer: How to highlight genes on genome visual reprezentation/what tool to use?
4 weeks ago by
Alex Reynolds
35k
0
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0
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360
views
Answer:
Answer: Error occurs when migrate-n software performs "make mpis"
7 weeks ago by
Alex Reynolds
35k
1
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1
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460
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Answer:
Answer: Coverage depth map of genome from multiple sample coverage bedgraphs?
7 weeks ago by
Alex Reynolds
35k
0
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0
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794
views
Answer:
Answer: Convert Gene symbol to Ensembl ID
9 weeks ago by
Alex Reynolds
35k
2
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0
replies
482
views
Answer:
Answer: line 164: 15342 Segmentation fault (core dumped) ${cmd} ${options} - 0<&0
12 weeks ago by
Alex Reynolds
35k
0
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1
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708
views
Answer:
Answer: Random Access remote BAM files
12 weeks ago by
Alex Reynolds
35k
2
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1
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456
views
Answer:
Answer: Double counts with bedtools intersect?
3 months ago by
Alex Reynolds
35k
1
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1
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1.4k
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Answer:
Answer: Some lines are not well organized in BED file, how to correct them ? Thanks a lo
4 months ago by
Alex Reynolds
35k
0
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0
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388
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Answer:
Answer: identify genes
4 months ago by
Alex Reynolds
35k
3
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2
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624
views
Answer:
Answer: Where can I get a list of SNPs mapping overlapping genes in humans?
5 months ago by
Alex Reynolds
35k
1
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0
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796
views
Answer:
Answer: Filter a BED file based on genome coordinates for gene names
6 months ago by
Alex Reynolds
35k
1
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0
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422
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Answer:
Answer: distance between chip peaks and individual TSS
6 months ago by
Alex Reynolds
35k
0
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0
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627
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Answer:
Answer: Simple tools for creation of figures of gene and protein structure
6 months ago by
Alex Reynolds
35k
0
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0
replies
530
views
Answer:
Answer: Visualize raw rna fastq file and aligned bam file
6 months ago by
Alex Reynolds
35k
0
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0
replies
1.3k
views
Answer:
Answer: Getting the overlap between two GTF files
7 months ago by
Alex Reynolds
35k
1
vote
1
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681
views
Answer:
Answer: Mapping SNP rsIds/ positions to genes coding for proteins
7 months ago by
Alex Reynolds
35k
0
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0
replies
769
views
Answer:
Answer: BED files
7 months ago by
Alex Reynolds
35k
0
votes
0
replies
461
views
Answer:
Answer: Visualize where kmers are on a reference genome
7 months ago by
Alex Reynolds
35k
2
votes
0
replies
757
views
Answer:
Answer: Create 10,000bp windows for a SNP file and assign each SNP to its respective win
7 months ago by
Alex Reynolds
35k
5
votes
2
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3.9k
views
Answer:
Answer: Reproduce the article "The complete sequence of a human genome."
8 months ago by
Alex Reynolds
35k
3
votes
2
replies
1.7k
views
Answer:
Answer: bedops alternative for bedtools -unionbedg ?
8 months ago by
Alex Reynolds
35k
0
votes
1
reply
1.5k
views
Answer:
Answer: Is Bioinformatics a Professional Degree?
8 months ago by
Alex Reynolds
35k
0
votes
0
replies
902
views
Answer:
Answer: Scanning a genomic region for TFBS
9 months ago by
Alex Reynolds
35k
0
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0
replies
622
views
Answer:
Answer: Identify binding motifs within large super enhancer region
10 months ago by
Alex Reynolds
35k
0
votes
0
replies
928
views
Answer:
Answer: BED files
11 months ago by
Alex Reynolds
35k
1
vote
1
reply
693
views
Answer:
Answer: how to intersect multiple bed files and get results in uncollapsed genomic inter
11 months ago by
Alex Reynolds
35k
2
votes
2
replies
3.5k
views
Answer:
Answer: Decoding MM and ML tags in .SAM file
10 months ago by
Alex Reynolds
35k
1
vote
1
reply
1.7k
views
Answer:
Answer: Finding TF motifs enriched in series of ATAC-seq peaks (using fimo?)
12 months ago by
Alex Reynolds
35k
0
votes
1
reply
654
views
Answer:
Answer: Does it possible to know what are the adjacent genes up to 1000bp upstream and
13 months ago by
Alex Reynolds
35k
2
votes
0
replies
2.2k
views
Answer:
Answer: gtf2bed not converting to bed
14 months ago by
Alex Reynolds
35k
1
vote
0
replies
609
views
Answer:
Answer: How do you get functional/biological role of motifs?
15 months ago by
Alex Reynolds
35k
0
votes
0
replies
991
views
Answer:
Answer: Merging and intersecting genomic ranges for an indefinite number of files
17 months ago by
Alex Reynolds
35k
0
votes
1
reply
991
views
Answer:
Answer: Merging and intersecting genomic ranges for an indefinite number of files
17 months ago by
Alex Reynolds
35k
2
votes
1
reply
940
views
Answer:
Answer: How can I use nohup command when filtering SNPs?
17 months ago by
Alex Reynolds
35k
1
vote
0
replies
1.3k
views
Answer:
Answer: Bedtools merge but only if intersection exists
17 months ago by
Alex Reynolds
35k
1
vote
1
reply
1.7k
views
Answer:
Answer: How to find overlapping regions in a single bed file
20 months ago by
Alex Reynolds
35k
0
votes
1
reply
1.7k
views
Answer:
Answer: Count regions that overlap with python
21 months ago by
Alex Reynolds
35k
2
votes
0
replies
2.3k
views
Answer:
Answer: Best formats for storing large amounts of data for random access
21 months ago by
Alex Reynolds
35k
0
votes
0
replies
480
views
Answer:
Answer: Visualization of trascription factor family grouped by biological function
22 months ago by
Alex Reynolds
35k
1
vote
0
replies
2.8k
views
Answer:
Answer: GFF to BED conversion
22 months ago by
Alex Reynolds
35k
2
votes
1
reply
1.2k
views
Answer:
Answer: Mapping chromosome location to gene ID
23 months ago by
Alex Reynolds
35k
0
votes
0
replies
827
views
Answer:
Answer: Comparing bed files for shifts and enlargements
23 months ago by
Alex Reynolds
35k
0
votes
0
replies
1.4k
views
Answer:
Answer: How to create bed file from list of variants with indels and bp values
24 months ago by
Alex Reynolds
35k
0
votes
1
reply
1.9k
views
Answer:
Answer: sliding windows over genome
24 months ago by
Alex Reynolds
35k
0
votes
0
replies
1.0k
views
Answer:
Answer: "moving average" function for "coverage" signal in bed files?
2.0 years ago by
Alex Reynolds
35k
1
vote
0
replies
1.2k
views
Answer:
Answer: How to interpret similar motifs in Homer results
2.0 years ago by
Alex Reynolds
35k
0
votes
0
replies
1.4k
views
Answer:
Answer: Why the bed file not recognized as a bed file
2.1 years ago by
Alex Reynolds
35k
0
votes
1
reply
1.1k
views
Answer:
Answer: Circos plot
2.1 years ago by
Alex Reynolds
35k
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