Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
0
votes
0
replies
114
views
Answer: Answer: geom_bar issue in ggplot2 with xlim()
12 hours ago by ATpoint 82k
0
votes
0
replies
150
views
Answer: Answer: seqtk subseq in.fastq list.txt > out.fastq not extracting full sequence from
18 hours ago by ATpoint 82k
0
votes
1
reply
316
views
Answer: Answer: Can I perform a correlation test with 3 biological replicates per condition?
3 days ago by ATpoint 82k
0
votes
2
replies
730
views
Answer: Answer: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
3 days ago by ATpoint 82k
3
votes
1
reply
234
views
Answer: Answer: Getting differential ChIP-seq peaks between conditions after calling consensus p
4 days ago by ATpoint 82k
0
votes
1
reply
464
views
Answer: Answer: Overlapping Ranges within Granges object
5 days ago by ATpoint 82k
0
votes
1
reply
231
views
Answer: Answer: Inquiry about deseq2 transformation
5 days ago by ATpoint 82k
1
vote
0
replies
177
views
Answer: Answer: The total expressed genes in RNA-Seq data
5 days ago by ATpoint 82k
0
votes
0
replies
134
views
Answer: Answer: What is the bin size for Bamcompare?
5 days ago by ATpoint 82k
2
votes
1
reply
292
views
Answer: Answer: error in fun(x((i)), ...) : only defined on a data frame with all numeric alike
8 days ago by ATpoint 82k
1
vote
0
replies
223
views
Answer: Answer: DESeq2 error
9 days ago by ATpoint 82k
0
votes
1
reply
341
views
Answer: Answer: How to convert normalized BigWig file to count matrix?
10 days ago by ATpoint 82k
1
vote
1
reply
243
views
Answer: Answer: How do I change the title font size in ViolinPlot (Seurat)
11 days ago by ATpoint 82k
0
votes
1
reply
359
views
Answer: Answer: A question about reference genome for creating the consensus sequence
11 days ago by ATpoint 82k
0
votes
0
replies
198
views
Answer: Answer: What is the proper way to identify the cell types of scRNAseq cluster?
12 days ago by ATpoint 82k
1
vote
1
reply
602
views
Answer: Answer: Tissue-specific DEG analysis with DEseq2
13 days ago by ATpoint 82k
0
votes
0
replies
381
views
Answer: Answer: install.packages("imudata")
13 days ago by ATpoint 82k
2
votes
0
replies
273
views
Answer: Answer: Analysis of intronic reads included scRNA-seq data
16 days ago by ATpoint 82k
1
vote
0
replies
207
views
Answer: Answer: DSEQ2 analysis
16 days ago by ATpoint 82k
2
votes
1
reply
385
views
Answer: Answer: What analysis suitable to identify similarly expressed genes between two samples
17 days ago by ATpoint 82k
2
votes
1
reply
227
views
Answer: Answer: MA plot of shrunken fold change
19 days ago by ATpoint 82k
1
vote
1
reply
987
views
Answer: Answer: High Malat-1 expression in single cell data
20 days ago by ATpoint 82k
5
votes
1
reply
353
views
Answer: Answer: ChIP-seq datasets: input samples omitted?
21 days ago by ATpoint 82k
2
votes
0
replies
445
views
Answer: Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
23 days ago by ATpoint 82k
2
votes
0
replies
373
views
Answer: Answer: Sequence read length shorter than flow cell specification
24 days ago by ATpoint 82k
4
votes
0
replies
331
views
Answer: Answer: Gene set enrichment analysis differences between 2020 and 2024
27 days ago by ATpoint 82k
1
vote
1
reply
419
views
Answer: Answer: What is the real meaning of relative enrichment/peak height of ChIP-seq tracks?
27 days ago by ATpoint 82k
0
votes
1
reply
359
views
Answer: Answer: Per base sequence content error in RNAseq analysis
27 days ago by ATpoint 82k
0
votes
0
replies
630
views
Answer: Answer: how to find genes that are significantly expressed in brain cortex samples
29 days ago by ATpoint 82k
0
votes
0
replies
313
views
Answer: Answer: DEseq2
4 weeks ago by ATpoint 82k
0
votes
1
reply
431
views
Answer: Answer: Which experiments generate Position Frequency Matrix?
4 weeks ago by ATpoint 82k
2
votes
1
reply
443
views
Answer: Answer: I am new to single cell analysis. Can RNA velocity (spliced/unspliced) be calcul
4 weeks ago by ATpoint 82k
3
votes
2
replies
403
views
Answer: Answer: I'm new to cell ranger. Can single cells prepared with a protocol other than the
4 weeks ago by ATpoint 82k
1
vote
1
reply
459
views
Answer: Answer: Deseq2 : Paired analysis or otherwise
5 weeks ago by ATpoint 82k
1
vote
0
replies
289
views
Answer: Answer: How to handle more than 1 SRA Run per Experiment?
5 weeks ago by ATpoint 82k
1
vote
0
replies
201
views
Answer: Answer: Shared pathways up in disease blood and tissue relative to healthy blood (scRNA-
5 weeks ago by ATpoint 82k
0
votes
1
reply
253
views
Answer: Answer: TMM normalization with DESeq2
updated 6 weeks ago by 43k • written 6 weeks ago by 82k
1
vote
0
replies
219
views
Answer: Answer: Can't download txdbmaker package
6 weeks ago by ATpoint 82k
0
votes
1
reply
407
views
Answer: Answer: Homer giving troubles
7 weeks ago by ATpoint 82k
4
votes
0
replies
321
views
Answer: Answer: Seeking Proper Interpretation of Dispersion Graph: A Call for Statistical and Bi
7 weeks ago by ATpoint 82k
0
votes
0
replies
285
views
Answer: Answer: How to calculate depth of coverage and applying read depth filter
7 weeks ago by ATpoint 82k
2
votes
1
reply
450
views
Answer: Answer: Problem generating paired end reads when converting Cell Ranger's BAM result to
7 weeks ago by ATpoint 82k
0
votes
1
reply
441
views
Answer: Answer: Limma compare between 3 conditions vs 2 conditions
7 weeks ago by ATpoint 82k
0
votes
1
reply
275
views
Answer: Answer: Using velocyto on 3'UTR 10x single-cell RNA-Seq data
7 weeks ago by ATpoint 82k
1
vote
0
replies
249
views
Answer: Answer: Can I use this community for software development?
7 weeks ago by ATpoint 82k
0
votes
0
replies
609
views
Answer: Answer: calculating mean fragment length from CollectInsertSizeMetrics(Picard) output
8 weeks ago by ATpoint 82k
2
votes
1
reply
319
views
Answer: Answer: How to visualize scRNA-seq normalized data
8 weeks ago by ATpoint 82k
2
votes
1
reply
276
views
Answer: Answer: Infering the cell composition from bulk RNA-seq data for mouse
8 weeks ago by ATpoint 82k
0
votes
1
reply
252
views
Answer: Answer: Gene set to perform GSVA
8 weeks ago by ATpoint 82k
1
vote
1
reply
337
views
Answer: Answer: Length by gene from salmon
8 weeks ago by ATpoint 82k
2,330 results • Page 1 of 47
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6