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Comment: Comment: Removing duplicates
4 weeks ago by samuel.a.odonnell ▴ 520
0
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1
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969
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Comment: Comment: Removing duplicates
4 weeks ago by samuel.a.odonnell ▴ 520
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0
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597
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Comment: Comment: Porechop demulitplexing of nanopore sequencing data and barcode bins for each sa
7 months ago by samuel.a.odonnell ▴ 520
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0
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1.2k
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Comment: Comment: Short Read Data Genome Assembly
8 months ago by samuel.a.odonnell ▴ 520
1
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1
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1.1k
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Comment: Comment: The GATK "The given bam input has no sample names." error
9 months ago by samuel.a.odonnell ▴ 520
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0
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883
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Comment: Comment: investigate the inversions in comparison of assembled genome with reference geno
9 months ago by samuel.a.odonnell ▴ 520
0
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1
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883
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Comment: Comment: investigate the inversions in comparison of assembled genome with reference geno
9 months ago by samuel.a.odonnell ▴ 520
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1
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551
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Comment: Comment: Expect heterozygous variant from reads
10 months ago by samuel.a.odonnell ▴ 520
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0
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900
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Comment: Comment: vg: Mapping fewer reads to a genome graph than a linear reference
11 months ago by samuel.a.odonnell ▴ 520
1
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1
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1.9k
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Comment: Comment: How to rerun Guppy Basecalling (with both fast5_pass and fast5_fail)
13 months ago by samuel.a.odonnell ▴ 520
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0
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1.0k
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Comment: Comment: MissAssembly Correction
14 months ago by samuel.a.odonnell ▴ 520
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1
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1.0k
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Comment: Comment: MissAssembly Correction
15 months ago by samuel.a.odonnell ▴ 520
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0
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555
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Answer: Answer: scaffold assembly inro chromosomal assembly using reference genome
15 months ago by samuel.a.odonnell ▴ 520
2
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1
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1.1k
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Comment: Comment: Problem with NextDenovo fungal assembly
16 months ago by samuel.a.odonnell ▴ 520
1
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0
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466
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Comment: Comment: Tools for annotating predicted genes?
16 months ago by samuel.a.odonnell ▴ 520
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0
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1.4k
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Comment: Comment: minimap2, before or after assembly?
17 months ago by samuel.a.odonnell ▴ 520
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0
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847
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Comment: Comment: Filtering mitochondrion reads from FastQ files
17 months ago by samuel.a.odonnell ▴ 520
1
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0
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1.2k
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Comment: Comment: How to fix long read from ONT : ERROR: Invalid char while reading fastq.gz file
18 months ago by samuel.a.odonnell ▴ 520
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0
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1.5k
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Comment: Comment: Low basecalling of raw ONT data
19 months ago by samuel.a.odonnell ▴ 520
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0
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994
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Comment: Comment: Assembly size is double the genome size despite specifying --genome-size in flye
19 months ago by samuel.a.odonnell ▴ 520
2
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1
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673
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Comment: Comment: Why SNPs with read depth > 100 or 200 were removed?
19 months ago by samuel.a.odonnell ▴ 520
2
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0
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886
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Comment: Comment: Help with geom_dotplot() script
20 months ago by samuel.a.odonnell ▴ 520
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0
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778
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Comment: Comment: How can I make a reference genome from multiple genomes?
20 months ago by samuel.a.odonnell ▴ 520
4
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1
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581
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assembly based phylogeny
whole-genome phylogenetics assembly
updated 20 months ago by ★ 1.2k • written 20 months ago by ▴ 520
2
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1
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843
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Answer: Answer: How do I input one fasta file for an entire reference genome?
20 months ago by samuel.a.odonnell ▴ 520
1
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1
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579
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Comment: Comment: Unexpected coverage across genome
21 months ago by samuel.a.odonnell ▴ 520
1
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0
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842
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Comment: Comment: ONT multiplexing not generating equal amount of data for each barcodes
21 months ago by samuel.a.odonnell ▴ 520
0
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0
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987
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Comment: Comment: Convert fasta to Fastq/bam
21 months ago by samuel.a.odonnell ▴ 520
0
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0
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934
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Comment: Comment: Variant calling for scaffold genome
24 months ago by samuel.a.odonnell ▴ 520
1
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1
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924
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Comment: Comment: A question about SPAdes
24 months ago by samuel.a.odonnell ▴ 520
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1
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1.0k
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Comment: Comment: Method to fill N gaps with de novo assembly
24 months ago by samuel.a.odonnell ▴ 520
0
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0
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625
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Comment: Comment: comparing and aligning 2 de novo genomes
2.0 years ago by samuel.a.odonnell ▴ 520
0
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1
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625
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Comment: Comment: comparing and aligning 2 de novo genomes
2.0 years ago by samuel.a.odonnell ▴ 520
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0
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1.1k
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Comment: Comment: Incomplete TE identification by repeatmasker
2.0 years ago by samuel.a.odonnell ▴ 520
0
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1
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1.1k
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Comment: Comment: Incomplete TE identification by repeatmasker
2.0 years ago by samuel.a.odonnell ▴ 520
0
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1
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1.1k
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Comment: Comment: Incomplete TE identification by repeatmasker
2.0 years ago by samuel.a.odonnell ▴ 520
1
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0
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1.0k
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Answer: Answer: "moving average" function for "coverage" signal in bed files?
2.0 years ago by samuel.a.odonnell ▴ 520
0
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0
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605
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Comment: Comment: Correct de novo assembly workflow and mapping
2.0 years ago by samuel.a.odonnell ▴ 520
0
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1
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722
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Comment: Comment: Considering two and more variation in polyploidy
2.0 years ago by samuel.a.odonnell ▴ 520
0
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1
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722
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Comment: Comment: Considering two and more variation in polyploidy
2.0 years ago by samuel.a.odonnell ▴ 520
2
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1
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971
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Comment: Comment: Why he/she disabled the base calling in Guppy?
2.1 years ago by samuel.a.odonnell ▴ 520
0
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0
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1.7k
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Comment: Comment: Re-assembly assembled genomes
2.3 years ago by samuel.a.odonnell ▴ 520
0
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0
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404
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Detecting novel material inside repeat array
genome repeat alignment
2.6 years ago by samuel.a.odonnell ▴ 520
0
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1
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1.1k
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Comment: Comment: How are two alleles typically represented in a whole genome sequence?
2.6 years ago by samuel.a.odonnell ▴ 520
0
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0
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598
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Comment: Comment: Structural variation nomenclature ambiguity
2.6 years ago by samuel.a.odonnell ▴ 520
0
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0
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2.0k
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Comment: Comment: Beginner problems: Aligning "genomes" that come in contigs
2.6 years ago by samuel.a.odonnell ▴ 520
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1
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2.0k
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Comment: Comment: Beginner problems: Aligning "genomes" that come in contigs
2.7 years ago by samuel.a.odonnell ▴ 520
1
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0
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3.6k
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Comment: Comment: large number of contigs after assembly
2.7 years ago by samuel.a.odonnell ▴ 520
0
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1
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3.6k
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Comment: Comment: large number of contigs after assembly
2.7 years ago by samuel.a.odonnell ▴ 520
0
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1
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3.6k
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Comment: Comment: large number of contigs after assembly
2.7 years ago by samuel.a.odonnell ▴ 520
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