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Recent Replies
Answer: How to handle duplicated genes in TCGA data?
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txema.heredia
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Having duplicate gene symbols is pretty common. Why do you need to work with gene symbols? To compare them to external datasets? Or just fo…
Comment: Merge clusters in Seurat UMAP
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kilcdincer
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It did not help either. But I got the answer [here][1]
Thank you!
[1]: https://github.com/satijalab/seurat/issues/8902
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there is no `--allsample` option in the "usage" screen you're showing. I suspect you're using an old version ?
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Thank you very much again. I have learned a lot of things.
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It's a microarryay experiment, not RNASeq
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https://gatk.broadinstitute.org/hc/en-us/articles/360035890671-Read-groups
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I have also recently come across another global alignment algorithm that was recently released which could seem pretty interesting to test …
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Not sure, you might ask in the repo, please share here the response if you find it
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LucisTheFather
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Would you be more specific to your question? Do you mean how to debug this syntax error?
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thank you
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I think this method should be applicable to all high-throughput single-cell RNA-seq platforms.
Although the method of determining cell spec…
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The dataset you want (taestivum_eg_gene) exists within the "plants_mart" schema, not the default schema. Your current code assumes the defa…
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You could use [this][1]
[1]: https://ggplot2.tidyverse.org/reference/geom_segment.html
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It might be because the gene symbol is not found in the KEGG database. Add some extra error handling before parsing the results or do a man…
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Thank you for your reply.
I am not very much sure about this RG. Can you explain me a bit?
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