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1,000 results • Page
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News:
Beyond beginner R: Advancing your coding skills - September 16-19
AdvancedCoding
Programming
R
4 hours ago by
carlopecoraro2
★ 2.5k
795
votes
167
replies
142k
views
109 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 3 months ago by
Biostar
2.7k • written 7.4 years ago by
Istvan Albert
100k
0
votes
0
replies
145
views
News:
Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy
Python
NumPy
updated 2 days ago by
Ram
43k • written 2 days ago by
Chakri
• 0
0
votes
0
replies
117
views
News:
Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis
Statistics
R
updated 2 days ago by
Ram
43k • written 2 days ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
271
views
News:
FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
DNA-seq
variant-calling
RNA-seq
illumina
transcriptomics
2 days ago by
David Langenberger
11k
0
votes
0
replies
107
views
News:
Online course: Genome Annotation
Genome-Assembly
Genome-Annotation
3 days ago by
carlopecoraro2
★ 2.5k
3
votes
0
replies
197
views
News:
Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy
Generative-AI
scRNA
Machine-Learning
updated 5 days ago by
Ram
43k • written 6 days ago by
Claire Watson
▴ 60
0
votes
0
replies
164
views
News:
Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis
Statistics
R
updated 6 days ago by
Ram
43k • written 6 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
122
views
News:
hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models
GLM
R
updated 7 days ago by
Ram
43k • written 8 days ago by
carlopecoraro2
★ 2.5k
3
votes
0
replies
130
views
News:
Interested in Spatial Omics?
Bioconductor
Spatial-Omics
Spatial-Transcriptomics
updated 8 days ago by
Ram
43k • written 8 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
92
views
News:
Online course: DNA methylation
Pacbio
Nanopore
DnaMethylation
Evolution
10 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
138
views
News:
upcoming online statistical courses
Statistics
R
Data-Analysis
updated 11 days ago by
Ram
43k • written 11 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
201
views
News:
Online course: Meta-analysis in R
Meta-Analysis
Statistics
R
updated 14 days ago by
Ram
43k • written 14 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
184
views
News:
Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo
Individual-Based-Models
Agent-Based-Models
updated 14 days ago by
Ram
43k • written 14 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
186
views
News:
Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop
RNA-seq
nextflow
DNA-seq
updated 15 days ago by
Ram
43k • written 16 days ago by
David Langenberger
11k
0
votes
0
replies
149
views
News:
Deadline Approaching: PETs for Public Health Challenge
privacy
public-health-challenge
updated 16 days ago by
Ram
43k • written 16 days ago by
polarise
▴ 380
0
votes
0
replies
186
views
News:
Online course: Network Analysis in R
NetworkAnalyis
R
18 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
192
views
News:
Online course: Meta-analysis in R
Meta-Analysis
R
updated 20 days ago by
Ram
43k • written 20 days ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
135
views
News:
Online Live Course: Introduction to Machine Learning in R
Rstats
TScourses
Rlang
Rproject
updated 20 days ago by
Ram
43k • written 21 days ago by
Transmitting Science communication
▴ 70
2
votes
0
replies
131
views
News:
Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM
Rlang
Rstats
Rproject
updated 20 days ago by
Ram
43k • written 21 days ago by
Transmitting Science communication
▴ 70
2
votes
0
replies
131
views
News:
Online Course Introduction to Network Analysis and Modelling
Python
Network-Analysis
updated 20 days ago by
Ram
43k • written 21 days ago by
Transmitting Science communication
▴ 70
2
votes
0
replies
120
views
News:
Course Functional Programming with R
Rstats
TScourses
Rproject
KeepLearning
Rlang
22 days ago by
Transmitting Science communication
▴ 70
12
votes
2
replies
467
views
News:
8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop
RNA-Seq
DNA-Seq
Illumina
22 days ago by
David Langenberger
11k
2
votes
0
replies
124
views
News:
Online course: Genome Annotation
Genome-Assembly
RNA-seq
Genome-Annotation
updated 22 days ago by
Ram
43k • written 22 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
125
views
News:
Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics
vegan
R
updated 23 days ago by
Ram
43k • written 24 days ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
182
views
News:
Landscape Genomics course in Switzerland
LFMM
Landscape-Genomics
Sambada
R
Local-Adaptation
4 hours ago by
carlopecoraro2
★ 2.5k
8
votes
2
replies
795
views
News:
FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell
sequencing
27 days ago by
David Langenberger
11k
0
votes
0
replies
151
views
News:
Online course: Food Traceability Using Genomic Tools
Nanopore
Genomic-Tools
Illumina
Food-Traceability
updated 28 days ago by
Ram
43k • written 29 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
153
views
News:
Online course: Eukaryotic Metabarcoding
Metabarcoding
Biodiversity
R
eDNA
4 weeks ago by
carlopecoraro2
★ 2.5k
3
votes
2
replies
603
views
News:
Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling
endocrinology
ML
systems-biology
machine-learning
4 weeks ago by
Johannes W. Dietrich
• 0
0
votes
0
replies
213
views
News:
Online course: Reproducibility in Bioinformatics
Singularity
Version-Control
Docker
Containers
updated 4 weeks ago by
Ram
43k • written 4 weeks ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
179
views
News:
Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic
Bacterial-Genomics
Pangenomics
updated 4 weeks ago by
Ram
43k • written 4 weeks ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
170
views
News:
Online course: Introduction to GWAS
GWAS
Imputation
StatisticalPower
5 weeks ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
168
views
News:
Online course: Adaptation Genomics
StructuralVariants
Selection
AdaptationGenomics
PopulationStructure
6 weeks ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
158
views
News:
Online course: Analysis of Prokaryotic Pangenomes
BacterialGenomics
Pangenomics
6 weeks ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
237
views
News:
Online course on Genome Assembly and Annotation (1 seat left)
Galaxy
GenomeAssembly
GenomeAnnotation
6 weeks ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
172
views
News:
NCBI's ClinVar now accepting somatic variation data
variation
NCBI
somatic-variants
ClinVar
6 weeks ago by
PeterC_NCBI
▴ 410
1
vote
1
reply
277
views
News:
EMBL Course Hands-on course for sample preparation and data analysis in proteomics
EMBLProteomics
updated 7 weeks ago by
dr.eldeib89
• 0 • written 12 weeks ago by
EMBL Events
▴ 10
1
vote
0
replies
203
views
News:
Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses
nextflow
pipeline
workshop
7 weeks ago by
David Langenberger
11k
0
votes
0
replies
158
views
News:
Online course: Genome Assembly and Annotation - 3 seats left
Genome-Assembly
Galaxy
Genome-Annotation
updated 7 weeks ago by
Ram
43k • written 7 weeks ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
158
views
News:
Call for abstract: Quest for Orthologs meeting in Montreal
conference
phylogeny
comparativegenomics
orthology
evolution
7 weeks ago by
sina.majidian
▴ 20
1
vote
0
replies
162
views
News:
shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability
terminal
bash
8 weeks ago by
David Langenberger
11k
1
vote
1
reply
203
views
News:
Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser
IGB
updated 8 weeks ago by
Ram
43k • written 8 weeks ago by
IGB Helper
• 0
0
votes
0
replies
193
views
News:
Online course: Network Analysis in Systems Biology with R/Bioconductor
R
RNA-seq
Network-Analysis
Bioconductor
Systems-Biology
updated 8 weeks ago by
Ram
43k • written 8 weeks ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
226
views
News:
The 2024 Canadian Bioinformatics Workshops are here!
CBW
workshop
training
8 weeks ago by
bioinformatics.ca
• 0
0
votes
0
replies
179
views
News:
Live online course Data Manipulation with R Tidyverse, 3 and 5 of April
R
manipulation
tidyverse
data
9 weeks ago by
Sole
• 0
0
votes
0
replies
202
views
News:
Online course: Reproducibility in Bioinformatics
Docker
Singularity
WorkflowManagementSystems
Reproducibility
9 weeks ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
258
views
News:
Online course: Genome Assembly Using Oxford Nanopore Sequencing - 4 seats remaining
GenomeAssembly
Nanopore
longreads
9 weeks ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
238
views
News:
Webinar about scRNA-seq cell type prediction
scRNAseq
updated 9 weeks ago by
GenoMax
142k • written 9 weeks ago by
jenny
• 0
0
votes
0
replies
250
views
News:
Online course: Spatial Omics in R/Bioconductor
R
Spatial-Omics
Bioconductor
tidyverse
transcriptomics
updated 10 weeks ago by
Ram
43k • written 10 weeks ago by
carlopecoraro2
★ 2.5k
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Recent Votes
Comment: Bacterial plasmid analysis
Comment: Problem with data downloaded from Short Reads Archive (SRA)
Comment: Problem with data downloaded from Short Reads Archive (SRA)
Comment: Problem with data downloaded from Short Reads Archive (SRA)
Comment: Problem with data downloaded from Short Reads Archive (SRA)
A: What is the difference between GRCh37 and hs37? And hg19?
A: Decoy In Reference Assembly
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Comment: Bacterial plasmid analysis
by
Zamin Iqbal
• 0
I vote for this, it's the best! (but also, I am Daria's PhD supervisor so I am biased). Preprint out soon(ish) [no pressure Daria!]
Comment: Downsampling long-read BAM files
by
GenoMax
142k
Is this what you used ultimately? Did this tool satisfy the "specific average depth" requirement? You could accept (green check mark) this…
Comment: Ideal PC configurations and operating system for bioinformatics laboratory
by
Estevão
• 0
Thank you. My budget is around 20 thousand dollars.
Answer: Problem with data downloaded from Short Reads Archive (SRA)
by
atharvakarkare14
▴ 20
Prefetch files using sratoolkit **prefetch** command and then use **fasterq-dump**. There you can see the number of reads. For validation, …
Answer: Downsampling long-read BAM files
by
eesiribloom
▴ 80
random downsampling of bam files is now possible using [rasusa][1] [v1.0.0][2] with the `aln` subcommand [1]: https://github.com/mbh…
Comment: Problem with data downloaded from Short Reads Archive (SRA)
by
GenoMax
142k
Use `vdb-validate` included in `sratoolkit` to check your `*.sra` files for integrity.
Comment: Problem with data downloaded from Short Reads Archive (SRA)
by
ATpoint
82k
This `fastq-dump --split-files *.sra` gives you fastq files. I am not sure how, with the given information, one might debug your problem. A…
Answer: What analysis suitable to identify similarly expressed genes between two samples
by
ATpoint
82k
DESeq2 has a "lessAbs" test which gioves you a pvalue that tests whether a fold change is **below** a user-defined threshold, see https://b…
Comment: RNAseq one control two conditions, shared and exclusive genes
by
Mohamed Abderrahmane
▴ 20
In your table RawCounts, keep only the columns corresponding to condition 1 and the control. Edit the table sampleTable to align with your …
Comment: Problem with data downloaded from Short Reads Archive (SRA)
by
Begonia_pavonina
▴ 150
Thank you @atpoint, I did already investigate this error on the DADA2 github. It seems that the "BiocParallel" error can be due to multipl…
Comment: Discrepancy in read counts from fastq
by
GenoMax
142k
Try `reformat.sh` from BBMap suite and its sampling parameters. You may get a third answer. Programs do some approximations so it is probab…
Comment: Problem with data downloaded from Short Reads Archive (SRA)
by
ATpoint
82k
One cannot help you with this. The error is from R, yet you show not a single line of R code.
Comment: Bacterial plasmid analysis
by
Daria
▴ 20
I am the colleague! My tool groups together plasmids based on two genetic distances: containment (how much of the smaller plasmid's sequenc…
Comment: Subsetting and merging back Seurat Object brings different results
by
Bine
▴ 60
Ok I think I know what happened. The order of cells changed, otherwise its the same: ![image](https://github.com/satijalab/seurat/assets/7…
Answer: Bacterial plasmid analysis
by
shenwei356
8.5k
My colleague has an unpublished tool for plasmid analysis (clustering), and it has really good results. You might have a try. https://githu…
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