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Comment: In one PCA plot, can I calculate the percentage of different factors that contri
by
diqixiaoyaoer
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You can have a look on my answer. I have post it below.
Answer: In one PCA plot, can I calculate the percentage of different factors that contri
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diqixiaoyaoer
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Here is my script that can be used to calculate how much degree that different factors contribute to PCA variance (PC1 and PC2).
# …
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Thank you so much for the beautiful explanation. Just one more curiosity. So in the first versions Salmon utilized RapMap to index and then…
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You should be stating how you constructed the index, and include the actual lines for the problematic genes from the abundance files. Note …
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You could try [salmon](https://combine-lab.github.io/salmon/getting_started/) to see if the problem is with kallisto or with the pseudo-ali…
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> INPUT FILE error: could not open input file /geneInfo.tab
Based on the error it appears that the input file you are providing could not …
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Having duplicate gene symbols is pretty common. Why do you need to work with gene symbols? To compare them to external datasets? Or just fo…
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It did not help either. But I got the answer [here][1]
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there is no `--allsample` option in the "usage" screen you're showing. I suspect you're using an old version ?
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Thank you very much again. I have learned a lot of things.
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It's a microarryay experiment, not RNASeq
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I have also recently come across another global alignment algorithm that was recently released which could seem pretty interesting to test …
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Not sure, you might ask in the repo, please share here the response if you find it
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