Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : today
all time
today
this week
this month
this year
42 results • Page
1 of 1
Sort: replies
Rank
Views
Votes
Replies
1
vote
14
replies
585
views
Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NULL > pointer.
blast
ncbi
3 hours ago by
hophuquy0944
• 0
2
votes
11
replies
571
views
DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts in whole blood: is it normal to always get NS?
rstudio
DEG
limma
1 hour ago by
egascon
• 0
3
votes
7
replies
273
views
Faster Needleman-Wunsch rapid global alignment of two sequences?
Needleman-Wunsch
alignment
updated 1 hour ago by
DGTool
▴ 20 • written 19 hours ago by
Gabriel R.
★ 2.9k
1
vote
5
replies
256
views
Annotating file using bcftools
annotation
plink
bcftools
18 hours ago by
kl
▴ 10
4
votes
5
replies
4.3k
views
Tool:
GRIDSS: the Genomic Rearrangement IDentification Software Suite
Assembly
Structural-Variation
Variant-Calling
updated 9 hours ago by
dario.garvan
▴ 520 • written 7.2 years ago by
d-cameron
★ 2.9k
1
vote
5
replies
220
views
Can I perform a correlation test with 3 biological replicates per condition?
RNA-Seq
deseq2
updated 10 hours ago by
Ram
43k • written 23 hours ago by
manuelmourato25
• 0
3
votes
4
replies
331
views
finding evidence(s) of a peptide translated from an "Upstream Open Reading Frame (uORF)"
UTR
masspec
uORF
peptide
updated 19 hours ago by
GenoMax
142k • written 23 hours ago by
Pierre Lindenbaum
161k
1
vote
4
replies
210
views
Tool:
Converting Degree Minutes (DM) to Decimal Degrees (DD) using python script
Minutes
Decimal
offtopic
Degrees
python
updated 10 hours ago by
Ram
43k • written 1 day ago by
kuttibiotech2009
▴ 30
1
vote
4
replies
295
views
In one PCA plot, can I calculate the percentage of different factors that contribute to the PCA?
PCA
R
VARIANCE
16 hours ago by
diqixiaoyaoer
▴ 10
0
votes
4
replies
242
views
calculating genomic coverage/ base overlap in R
genomics
updated 18 hours ago by
Ram
43k • written 1 day ago by
Xbox_27
• 0
0
votes
4
replies
189
views
Merge clusters in Seurat UMAP
seurat
umap
51 minutes ago by
kilcdincer
▴ 10
3
votes
4
replies
246
views
Would you bother re-mapping RNA-seq data from an old GRCh38 build to a newer version?
RNA-seq
genome
updated 18 hours ago by
Ram
43k • written 1 day ago by
Ali
• 0
0
votes
4
replies
232
views
How to extract cells of different species after mapping with combined genome?
snRNA-seq
scRNA-seq
updated 3 hours ago by
Tony
• 0 • written 1 day ago by
vk
▴ 10
3
votes
3
replies
164
views
getting exon coordinates
genomics
updated 18 hours ago by
Ram
43k • written 19 hours ago by
Xbox_27
• 0
2
votes
3
replies
194
views
ggrepel function: geom_text_repel()
ggplot2
ggrepel
R
updated 10 hours ago by
Ram
43k • written 1 day ago by
sooni
▴ 20
0
votes
3
replies
175
views
Sam file Header problem
Sam
Header
problem
file
updated 1 hour ago by
Pierre Lindenbaum
161k • written 1 day ago by
saifulislam99121
• 0
1
vote
3
replies
266
views
Is there any way to modify this pie chart ?
pie
ggplot
R
chart
updated 15 hours ago by
GenoMax
142k • written 3 days ago by
ohtang7
▴ 40
1
vote
3
replies
793
views
About runing Pilon on individual chromosomes when polish draft genome assembly
Pilon
chromosome
polish
genome
draft
updated 14 hours ago by
sansan_96
▴ 90 • written 2.7 years ago by
boymin2020
▴ 80
0
votes
2
replies
162
views
perseus software (version 1.5.5)
preseus
mass
spectrometry
data
updated 21 hours ago by
DGTool
▴ 20 • written 2 days ago by
iqra
• 0
2
votes
2
replies
180
views
Cannot install bwa-mem2 via conda
conda
mamba
python
updated 18 hours ago by
Ram
43k • written 1 day ago by
jsmith120f
• 0
2
votes
2
replies
164
views
Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
single-cell
ambient-RNA
updated 13 hours ago by
Ram
43k • written 15 hours ago by
txema.heredia
▴ 130
3
votes
2
replies
175
views
Details on salmon index
Salmon
updated 17 hours ago by
Rob
6.6k • written 23 hours ago by
Lorenzo
• 0
1
vote
2
replies
222
views
Why does assigning genes with biomart give me different values than using a transcripts_to_genes.txt file?
biomart
RNAseq
kallisto
17 hours ago by
bioinfo
▴ 150
0
votes
2
replies
84
views
How to generate table_annovar from VCF input?
vcf
annovar
updated 1 hour ago by
Pierre Lindenbaum
161k • written 7 hours ago by
melissachua90
▴ 70
0
votes
1
reply
64
views
How to handle duplicated genes in TCGA data?
TCGA
GDC
mRNA
updated 47 minutes ago by
txema.heredia
▴ 130 • written 9 hours ago by
Ngrin
• 0
0
votes
1
reply
144
views
Seurat v5 and how to correctly integrate across multiple experiments
Seurat
scRNA
R
updated 21 hours ago by
Papyrus
★ 2.9k • written 1 day ago by
yura.grabovska
▴ 90
0
votes
1
reply
146
views
Difference in number of reads when using duplex and simplex base calling with Dorado
base
calling
nanopore
simplex
dorado
duplex
updated 18 hours ago by
GenoMax
142k • written 1 day ago by
Lélé
▴ 10
0
votes
1
reply
121
views
mitochondrial genome assembly pipeline
mammals
mitochondrial-genome
updated 18 hours ago by
Ram
43k • written 20 hours ago by
m90
▴ 30
0
votes
1
reply
117
views
How can I calculate the OS of each patient?
overall-survival
updated 18 hours ago by
ATpoint
82k • written 18 hours ago by
Pedro
• 0
1
vote
1
reply
184
views
Help with VG Toolkit: VCF Output is Empty
vg
updated 13 hours ago by
Jordan M Eizenga
▴ 460 • written 11 days ago by
sarumonsus
▴ 10
1
vote
1
reply
134
views
Tool:
Collect dispersed executable files and run them by using bingo.
bingo
updated 10 hours ago by
Ram
43k • written 1 day ago by
dwpeng
▴ 10
0
votes
1
reply
117
views
API kegg - IndexError: list index out of range
kegg
API
updated 5 hours ago by
Nyksubuz
▴ 10 • written 1 day ago by
mirwa.zidi93
• 0
0
votes
1
reply
130
views
Add line under stat test
stats
R
updated 5 hours ago by
Nyksubuz
▴ 10 • written 1 day ago by
Ghada
• 0
0
votes
1
reply
78
views
Tutorial:
solution-Transcriptome.cpp:18:Transcriptome: exiting because of *INPUT FILE* error: could not open input file /geneInfo.tab #2142
STAR
written 6 hours ago by
huxiangyulove
• 0
0
votes
1
reply
111
views
BiomartException: Query ERROR for existing dataset in BioMart
biomart
ensembl
wheat
python
pybiomart
updated 4 hours ago by
Nyksubuz
▴ 10 • written 1 day ago by
Luqman
• 0
0
votes
0
replies
33
views
How do I quantify the non-coding transcripts that I have generated after using CPAT,PLEK, and BLAST altogether?
transcript
Quantify
non-coding
2 hours ago by
Varsha
• 0
0
votes
0
replies
56
views
Help interpreting KEGG module definitions for converting to NetworkX graph
definition
kegg
module
database
genomics
9 hours ago by
O.rka
▴ 720
0
votes
0
replies
57
views
Help! Reconstruction of locus, order contigs
contigs
cluster
alignment
locus
9 hours ago by
BATMAN
• 0
0
votes
0
replies
75
views
News:
Course on Manual Genome Curation
Genome-Assembly
Pretext-View
Manual-Genome-Curation
updated 10 hours ago by
Ram
43k • written 16 hours ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
61
views
Use of ichor CNA
Dog
CNA
genome
14 hours ago by
sainavyav22
• 0
0
votes
0
replies
67
views
Error when running create-maf-vcf at convertGVCFToHVCFForChrom step - PHGv2
PHG
pangenome
PHG_v2
17 hours ago by
Jsarria.EEAD
• 0
0
votes
0
replies
68
views
cat-bgen fail
bgenix
updated 18 hours ago by
Ram
43k • written 18 hours ago by
lambard
• 0
42 results • Page
1 of 1
Recent Votes
Comment: How does FindNeighbors() and FindClusters() related and work?
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
lncRNA and ncPEPs identification
Answer: Identifying common DEGs among multiple datasets
Answer: ggrepel function: geom_text_repel()
Comment: switch off warning in blast command line
Forward And Reverse Strand Conventions
Recent Locations •
All
Germany,
just now
Belgium,
2 minutes ago
Netherlands,
5 minutes ago
United Kingdom,
6 minutes ago
Italy,
7 minutes ago
United States,
8 minutes ago
Belgium,
9 minutes ago
Recent Awards •
All
Popular Question
to
Umer
▴ 50
Scholar
to
zx8754
11k
Teacher
to
Rob
6.6k
Popular Question
to
Nyksubuz
▴ 10
Popular Question
to
Govardhan Anande
▴ 150
Popular Question
to
Lhl
▴ 760
Popular Question
to
Takuma
▴ 20
Recent Replies
Answer: How to handle duplicated genes in TCGA data?
by
txema.heredia
▴ 130
Having duplicate gene symbols is pretty common. Why do you need to work with gene symbols? To compare them to external datasets? Or just fo…
Comment: Merge clusters in Seurat UMAP
by
kilcdincer
▴ 10
It did not help either. But I got the answer [here][1] Thank you! [1]: https://github.com/satijalab/seurat/issues/8902
Comment: How to generate table_annovar from VCF input?
by
Pierre Lindenbaum
161k
there is no `--allsample` option in the "usage" screen you're showing. I suspect you're using an old version ?
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
by
egascon
• 0
Thank you very much again. I have learned a lot of things.
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
by
egascon
• 0
It's a microarryay experiment, not RNASeq
Comment: Sam file Header problem
by
Pierre Lindenbaum
161k
https://gatk.broadinstitute.org/hc/en-us/articles/360035890671-Read-groups
Answer: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
DGTool
▴ 20
I have also recently come across another global alignment algorithm that was recently released which could seem pretty interesting to test …
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
b.contreras.moreira
▴ 190
Not sure, you might ask in the repo, please share here the response if you find it
Comment: How to generate table_annovar from VCF input?
by
LucisTheFather
• 0
Would you be more specific to your question? Do you mean how to debug this syntax error?
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
hophuquy0944
• 0
thank you
Comment: How to extract cells of different species after mapping with combined genome?
by
Tony
• 0
I think this method should be applicable to all high-throughput single-cell RNA-seq platforms. Although the method of determining cell spec…
Comment: BiomartException: Query ERROR for existing dataset in BioMart
by
Nyksubuz
▴ 10
The dataset you want (taestivum_eg_gene) exists within the "plants_mart" schema, not the default schema. Your current code assumes the defa…
Comment: Add line under stat test
by
Nyksubuz
▴ 10
You could use [this][1] [1]: https://ggplot2.tidyverse.org/reference/geom_segment.html
Comment: API kegg - IndexError: list index out of range
by
Nyksubuz
▴ 10
It might be because the gene symbol is not found in the KEGG database. Add some extra error handling before parsing the results or do a man…
Comment: Sam file Header problem
by
saifulislam99121
• 0
Thank you for your reply. I am not very much sure about this RG. Can you explain me a bit?
Traffic: 2181 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6