Limit : this week
all time today this week this month this year
186 results • Page 1 of 4
Sort: replies
Rank Views Votes Replies
9
votes
23
replies
9.8k
views
Tool: BioLabDonkey - new Mac program for molecular biologists
software biolabdonkey
5 days ago by vytarasov ▴ 180
2
votes
14
replies
2.9k
views
6 follow
CNVKIT - unable to produce scatter and diagram pdfs
cnvkit
updated 2 days ago by • 0 • written 4.8 years ago by ▴ 60
1
vote
14
replies
572
views
Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NULL > pointer.
blast ncbi
2 hours ago by hophuquy0944 • 0
9
votes
13
replies
4.8k
views
Custom Reference panel creation for data imputation from .vcf files
imputation reference panel
updated 6 days ago by ▴ 50 • written 6.4 years ago by ▴ 490
2
votes
11
replies
552
views
DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts in whole blood: is it normal to always get NS?
rstudio DEG limma
10 minutes ago by egascon • 0
0
votes
11
replies
533
views
In IGV is this a heterogeneous mutation or false call?
mutations IGV heterogeneous
4 days ago by Tuck898 • 0
0
votes
9
replies
595
views
Applying the metacell2 algorithm using python
python single-cell scanpy metacell2
updated 1 day ago by ★ 2.0k • written 10 days ago by ▴ 140
1
vote
9
replies
392
views
UMI-Tools knee-method has great influence on the results of white list
single-cell whitelist UMI RNA UMI-Tools
updated 6 days ago by 19k • written 9 days ago by ★ 1.8k
0
votes
9
replies
342
views
Duplicated reads (IDs) from nanopore sequencing
bam nanopore sequencing
1 day ago by njornet ▴ 20
2
votes
9
replies
693
views
Filtering Multi-sample VCF file for all except one Genotype
variant SNP VCF
updated 1 day ago by 161k • written 9 days ago by • 0
0
votes
9
replies
596
views
Using VEP annotation output as the input for a second VEP annotation
Annotation VEP VCF
1 day ago by Arton ▴ 10
2
votes
8
replies
375
views
joint callset and vcf sorting, unknown TAG issue
sort bcftools GLNexus merge VCF
updated 4 days ago by 161k • written 4 days ago by ▴ 100
1
vote
7
replies
379
views
Overlapping Ranges within Granges object
Genomicranges IRanges GRanges
2 days ago by ntsopoul ▴ 60
9
votes
7
replies
7.2k
views
Align paired and unpaired reads simultaneously using Bowtie2?
alignment
updated 5 days ago by • 0 • written 5.7 years ago by ▴ 20
0
votes
7
replies
423
views
RNAseq one control two conditions, shared and exclusive genes
conditions RNAseq multiple Rstudio
updated 3 days ago by ▴ 20 • written 17 days ago by • 0
5
votes
7
replies
483
views
RNA seq analysis
DESeq RNA-seq
1 day ago by Jacek ▴ 20
3
votes
7
replies
262
views
Faster Needleman-Wunsch rapid global alignment of two sequences?
Needleman-Wunsch alignment
updated 34 minutes ago by ▴ 20 • written 18 hours ago by ★ 2.9k
4
votes
7
replies
397
views
How does gene length effect the number of reads mapped
RNA-seq CPM sequencing
3 days ago by Chen • 0
6
votes
7
replies
385
views
Longest transcript variant per gene
transcript longest variant orthofinder
4 days ago by sansan_96 ▴ 90
2
votes
6
replies
380
views
BWA alignment
Samtools bam
updated 2 days ago by ▴ 260 • written 4 days ago by • 0
0
votes
6
replies
419
views
Is it Possible to "Merge" data from Replicates within a VCF SNP File
snp vcf genomics plink
updated 3 days ago by 43k • written 6 days ago by • 0
2
votes
6
replies
1.9k
views
How can you *consistently* download BioProject IDs from NCBI's BioSample database using Entrez Direct?
XML ncbi entrez-direct
updated 1 day ago by 43k • written 3.9 years ago by • 0
3
votes
6
replies
488
views
install package: package ‘gmwm’ is not available for this version of R
r
updated 4 days ago by ▴ 20 • written 11 days ago by • 0
6
votes
5
replies
1.7k
views
How to calculate coverage of Nanopore long read data?
sequencing coverage
2 days ago by Arton ▴ 10
2
votes
5
replies
566
views
Tissue-specific DEG analysis with DEseq2
DEseq2 RNA-seq DEG R
updated 4 days ago by ▴ 40 • written 13 days ago by ▴ 30
2
votes
5
replies
266
views
What does the 'E%' represent in BUSCO results?
BUSCO
updated 3 days ago by 8.5k • written 3 days ago by • 0
6
votes
5
replies
2.3k
views
Tophat multiple or unique mapping criteria
RNA-Seq
updated 4 days ago by • 0 • written 6.7 years ago by • 0
0
votes
5
replies
277
views
bbmerge (bbmap) ~ error with insert size file output
bbtools bbmerge bbmap
updated 1 day ago by 142k • written 2 days ago by • 0
2
votes
5
replies
491
views
featureCounts output summary assigned value higher than uniquely mapped reads from HISAT2
RNA-seq featureCounts HISAT
updated 2 days ago by 43k • written 8 days ago by • 0
1
vote
5
replies
781
views
Converting IGV to Figure using Illustrator (or other tools)
Illustrator IGV
written 6 months ago by ▴ 30
1
vote
5
replies
214
views
Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
circos atacseq
updated 1 day ago by 161k • written 1 day ago by ▴ 50
0
votes
5
replies
316
views
Too many unpaired forward reads found by Trimmomatic
Trimmomatic
3 days ago by SilhouetteQ • 0
0
votes
5
replies
330
views
How to convert normalized BigWig file to count matrix?
count-matrix BigWig
4 days ago by feather-W • 0
1
vote
5
replies
218
views
Can I perform a correlation test with 3 biological replicates per condition?
RNA-Seq deseq2
updated 9 hours ago by 43k • written 21 hours ago by • 0
1
vote
5
replies
256
views
Annotating file using bcftools
annotation plink bcftools
17 hours ago by kl ▴ 10
4
votes
5
replies
4.3k
views
Tool: GRIDSS: the Genomic Rearrangement IDentification Software Suite
Assembly Structural-Variation Variant-Calling
updated 8 hours ago by ▴ 520 • written 7.2 years ago by ★ 2.9k
0
votes
4
replies
227
views
Sequencing Depth (Read Depth) Calculations
depth
1 day ago by LucisTheFather • 0
0
votes
4
replies
2.3k
views
MGLTools does not work in windows 11
windows-11 Autodock windows MGLTools
updated 2 days ago by 43k • written 13 months ago by • 0
1
vote
4
replies
499
views
cellranger error message
multiplexing cellranger
updated 6 days ago by • 0 • written 3 months ago by ▴ 10
1
vote
4
replies
340
views
Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene prediction.
augustus annotation assembly genome
updated 2 days ago by 8.6k • written 3 days ago by ▴ 30
1
vote
4
replies
281
views
Add stats to boxplot in R
stats R
1 day ago by Ghada • 0
1
vote
4
replies
339
views
Contig assembly task, errors
dna genetics contig assembly
updated 3 days ago by 43k • written 8 days ago by • 0
2
votes
4
replies
5.6k
views
44% Successfully Assigned Fragments with featureCounts after 85% uniquely mapped reads with STAR
rna-seq alignment RNA-Seq featureCounts STAR
updated 3 days ago by ▴ 340 • written 4.9 years ago by ▴ 70
3
votes
4
replies
318
views
Truncated metadata file report from ENA Portal API
ena python
6 days ago by Giulia • 0
1
vote
4
replies
412
views
Can I readmap short reads to rDNA references?
rDNA assembly
updated 6 days ago by 142k • written 29 days ago by • 0
0
votes
4
replies
3.6k
views
SNPEff database building error
SNP
updated 3 days ago by • 0 • written 7.1 years ago by • 0
0
votes
4
replies
395
views
Adata.raw.X in LIANA, something wrong with conversion from Seurat to adata in python.
k
4 days ago by beginner123 • 0
6
votes
4
replies
13k
views
Trimmomatic: What is the difference between paired and unpaired output files in paired-end mode
trimmomatic paired-end
updated 5 days ago by • 0 • written 6.5 years ago by ▴ 130
0
votes
4
replies
300
views
Correlation Analysis
statistics methylation NGS expression
6 days ago by Researcher ▴ 30
4
votes
4
replies
2.9k
views
CNVkit for somatic copy number detection
cnv cnvkit exome WES
updated 2 days ago by • 0 • written 5.1 years ago by • 0
186 results • Page 1 of 4
Recent Votes
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
lncRNA and ncPEPs identification
Answer: Identifying common DEGs among multiple datasets
Answer: ggrepel function: geom_text_repel()
Comment: switch off warning in blast command line
Forward And Reverse Strand Conventions
Answer: Would you bother re-mapping RNA-seq data from an old GRCh38 build to a newer ver
Recent Locations • All
France, just now
ETH Zurich, just now
France, 1 minute ago
Spain, 1 minute ago
Spain, 2 minutes ago
Russia, 4 minutes ago
India, 5 minutes ago
Recent Awards • All
Teacher to Rob 6.6k
Popular Question to Nyksubuz ▴ 10
Popular Question to Govardhan Anande ▴ 150
Popular Question to Lhl ▴ 760
Popular Question to Takuma ▴ 20
Popular Question to BATMAN • 0
Teacher to dario.garvan ▴ 520
Recent Replies
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i by egascon • 0
Thank you very much again. I have learned a lot of things.
Comment: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i by egascon • 0
It's a microarryay experiment, not RNASeq
Comment: Sam file Header problem by Pierre Lindenbaum 161k
https://gatk.broadinstitute.org/hc/en-us/articles/360035890671-Read-groups
Answer: Faster Needleman-Wunsch rapid global alignment of two sequences? by DGTool ▴ 20
I have also recently come across another global alignment algorithm that was recently released which could seem pretty interesting to test …
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences? by b.contreras.moreira ▴ 190
Not sure, you might ask in the repo, please share here the response if you find it
Answer: How to generate table_annovar from VCF input? by LucisTheFather • 0
Would you be more specific to your question? Do you mean how to debug this syntax error?
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
thank you
Comment: How to extract cells of different species after mapping with combined genome? by Tony • 0
I think this method should be applicable to all high-throughput single-cell RNA-seq platforms. Although the method of determining cell spec…
Comment: BiomartException: Query ERROR for existing dataset in BioMart by Nyksubuz ▴ 10
The dataset you want (taestivum_eg_gene) exists within the "plants_mart" schema, not the default schema. Your current code assumes the defa…
Comment: Add line under stat test by Nyksubuz ▴ 10
You could use [this][1] [1]: https://ggplot2.tidyverse.org/reference/geom_segment.html
Comment: API kegg - IndexError: list index out of range by Nyksubuz ▴ 10
It might be because the gene symbol is not found in the KEGG database. Add some extra error handling before parsing the results or do a man…
Comment: Sam file Header problem by saifulislam99121 • 0
Thank you for your reply. I am not very much sure about this RG. Can you explain me a bit?
Comment: GRIDSS: the Genomic Rearrangement IDentification Software Suite by dario.garvan ▴ 520
It seems that Alexandrov's [structural variant and copy number signatures][1] estimated by the [SigProfiler software ecosystem][2] aren't c…
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences? by GenoMax 142k
Then you may want to see if a program like `lastz` ([**LINK**][1]) may be useful. [1]: https://github.com/lastz/lastz
Comment: Collect dispersed executable files and run them by using bingo. by Ram 43k
What is the purpose of this tool? I have `~/bin` in my $PATH and I soft-link all executables I need to that location so why install a new t…
Traffic: 2017 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6