Calculating the read counts from LogCPM values (EdgeR)
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6.5 years ago
Sheila ▴ 440

Hi, I have a list of logCPM values for a long list of genes. I would like to calculate the read counts from these values. I see that in EdgeR there is a getCounts() function, however it requires the data be in a DGEList-class format. The logCPM values I have, unfortunately is older and was not provided to me in the structure required for getCounts(). Can anyone help how I could go about back-calculating to read counts?

RNA-Seq R • 2.4k views
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