Question

Tool for rendering quick PNG/SVG/etc. from a single BED12 element?

1

Entering edit mode

5.7 years ago

Alex Reynolds 35k

In attempting not to reinvent the wheel, are there any lightweight tools that take a single BED12 element and quickly render its intron/UTR/CDS structure and directionality?

I'm not looking for a heavyweight toolkit or framework that renders a static genome browser shot of multiple BED12 elements, but something that takes in an element and simply shows a rough sketch of its structure. Thanks for any tips!

visualization bed12 gene bed • 1.5k views

ADD COMMENT • link updated 5.7 years ago by Pierre Lindenbaum 164k • written 5.7 years ago by Alex Reynolds 35k

score 4 · Accepted Answer · 2019-02-05

4

Entering edit mode

5.7 years ago

Pierre Lindenbaum 164k

a very basic html form converting a bed12 entry to SVG :

ADD COMMENT • link 5.7 years ago by Pierre Lindenbaum 164k

1

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This is quite handy for working into a React component. Many thanks.

ADD REPLY • link 5.7 years ago by Alex Reynolds 35k