annotation with Augustus
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4.2 years ago
Ric ▴ 440

Hi, we have a plant genome and would like to create an annotation with Augustus. However, I am not sure about the following few parameters.

  • noInFrameStop=false
  • allow_hinted_splicesites=atac
  • genemodel=partial or --genemodel=complete

Which settings are appropriate for a plant genome?

Thank you in advance

gene genome annotation augustus • 1.1k views
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4.2 years ago
Ric ▴ 440

Has been answered here

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Thanks for posting the link, Ric.

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