how to obtain annotation file from Genbank file
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3.5 years ago
wes ▴ 90

I would like to use IRscope, an online program to visualize the junction sites of chloroplast genomes. However, it requests annotation file in a plain text format (.txt) of the four tab separated columns, as start of the gene, end of the gene, its name, and the direction of it (+ or -). May I know how to generate this annotation file from file in genbank format (.gb)?

annotation • 838 views
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You can try this script to see you can get a BED format file (which is what you are describing).

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