Entering edit mode
12 months ago
_quantum_girl_
▴
60
Hi I'd like to compute the burden, meaning the number of SNPs with MAF<0.01 within a gene using Regenie. I AM NOT interested in doing an association test, so I guess I have to provide a dummy phenotype file.
I am interested in getting for each person whether it has 0 variants, heterozygous variants or homozygous variants. I have been struggling to find the correct flag for producing such output.
Any help would be appreciated.
