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13 days ago
Hi, I have just tried to convert the synchronized file into a gene-based synchronized file, and the command runs, but the output file is empty. Any ideas? The input sync file works fine with other commands. Perhaps it is the gtf file,
I have converted the mikado.gff3 file into gtf file using the "gffread" tool.
here is the heading of gftf file
Chr1 Mikado_loci transcript 32398 36487 19.0 + . transcript_id "mikado.Chr1G1.1"; gene_id "mikado.Chr1G1"
Chr1 Mikado_loci exon 32398 32919 . + . transcript_id "mikado.Chr1G1.1"; gene_id "mikado.Chr1G1";
Chr1 Mikado_loci exon 33696 33859 . + . transcript_id "mikado.Chr1G1.1"; gene_id "mikado.Chr1G1";
any idea is highly appreciated. thank you