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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 3 months ago by 2.7k • written 7.4 years ago by 100k
0
votes
0
replies
85
views
News: Online course: Introduction to Deep Learning
Python Deep-Learning Convolutional-Neural-Network Machine-Learning
updated 17 hours ago by 43k • written 21 hours ago by ★ 2.5k
0
votes
0
replies
108
views
News: Online course. -Time series analysis and Forecasting in R
Time-Series Forecasting R Stastics
1 day ago by carlopecoraro2 ★ 2.5k
1
vote
2
replies
245
views
News: We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering Spatial-transcriptomics
updated 2 days ago by • 0 • written 3 days ago by ▴ 10
0
votes
0
replies
109
views
News: Online course: Bioinformatic analysis of transposable elements
GenomeAssembly Transcriptomics TransposableElements ManualCuration
4 days ago by carlopecoraro2 ★ 2.5k
1
vote
2
replies
1.1k
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
4 days ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
138
views
News: Cellosaurus release 49 is available
cell biocuration line database news knowledgebase
6 days ago by Amos Bairoch ▴ 120
0
votes
0
replies
108
views
News: Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding Programming R
updated 6 days ago by 43k • written 7 days ago by ★ 2.5k
0
votes
0
replies
169
views
News: Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy Python NumPy
updated 8 days ago by 43k • written 8 days ago by • 0
0
votes
0
replies
135
views
News: Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis Statistics R
updated 9 days ago by 43k • written 9 days ago by ★ 2.5k
0
votes
1
reply
297
views
News: FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
DNA-seq variant-calling RNA-seq illumina transcriptomics
9 days ago by David Langenberger 11k
0
votes
0
replies
124
views
News: Online course: Genome Annotation
Genome-Assembly Genome-Annotation
10 days ago by carlopecoraro2 ★ 2.5k
3
votes
0
replies
223
views
News: Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy Generative-AI scRNA Machine-Learning
updated 12 days ago by 43k • written 13 days ago by ▴ 60
0
votes
0
replies
176
views
News: Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis Statistics R
updated 13 days ago by 43k • written 13 days ago by ★ 2.5k
0
votes
0
replies
133
views
News: hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models GLM R
updated 14 days ago by 43k • written 15 days ago by ★ 2.5k
3
votes
0
replies
143
views
News: Interested in Spatial Omics?
Bioconductor Spatial-Omics Spatial-Transcriptomics
updated 15 days ago by 43k • written 15 days ago by ★ 2.5k
0
votes
0
replies
105
views
News: Online course: DNA methylation
Pacbio Nanopore DnaMethylation Evolution
17 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
150
views
News: upcoming online statistical courses
Statistics R Data-Analysis
updated 17 days ago by 43k • written 18 days ago by ★ 2.5k
0
votes
0
replies
213
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 21 days ago by 43k • written 21 days ago by ★ 2.5k
0
votes
0
replies
195
views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo Individual-Based-Models Agent-Based-Models
updated 21 days ago by 43k • written 21 days ago by ★ 2.5k
0
votes
0
replies
194
views
News: Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop RNA-seq nextflow DNA-seq
updated 22 days ago by 43k • written 23 days ago by 11k
0
votes
0
replies
159
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 23 days ago by 43k • written 23 days ago by ▴ 380
0
votes
0
replies
194
views
News: Online course: Network Analysis in R
NetworkAnalyis R
25 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
200
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 27 days ago by 43k • written 27 days ago by ★ 2.5k
1
vote
0
replies
145
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 27 days ago by 43k • written 28 days ago by ▴ 70
2
votes
0
replies
139
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 27 days ago by 43k • written 28 days ago by ▴ 70
2
votes
0
replies
139
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 27 days ago by 43k • written 28 days ago by ▴ 70
2
votes
0
replies
126
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
29 days ago by Transmitting Science communication ▴ 70
12
votes
2
replies
491
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
29 days ago by David Langenberger 11k
2
votes
0
replies
136
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 29 days ago by 43k • written 29 days ago by ★ 2.5k
0
votes
0
replies
134
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 4 weeks ago by 43k • written 4 weeks ago by ★ 2.5k
1
vote
0
replies
191
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
7 days ago by carlopecoraro2 ★ 2.5k
8
votes
2
replies
824
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
4 weeks ago by David Langenberger 11k
0
votes
0
replies
160
views
News: Online course: Food Traceability Using Genomic Tools
Nanopore Genomic-Tools Illumina Food-Traceability
updated 5 weeks ago by 43k • written 5 weeks ago by ★ 2.5k
0
votes
0
replies
161
views
News: Online course: Eukaryotic Metabarcoding
Metabarcoding Biodiversity R eDNA
5 weeks ago by carlopecoraro2 ★ 2.5k
3
votes
2
replies
620
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
5 weeks ago by Johannes W. Dietrich • 0
0
votes
0
replies
221
views
News: Online course: Reproducibility in Bioinformatics
Singularity Version-Control Docker Containers
updated 5 weeks ago by 43k • written 5 weeks ago by ★ 2.5k
0
votes
0
replies
185
views
News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 5 weeks ago by 43k • written 5 weeks ago by ★ 2.5k
0
votes
0
replies
182
views
News: Online course: Introduction to GWAS
GWAS Imputation StatisticalPower
6 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
175
views
News: Online course: Adaptation Genomics
StructuralVariants Selection AdaptationGenomics PopulationStructure
7 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
165
views
News: Online course: Analysis of Prokaryotic Pangenomes
BacterialGenomics Pangenomics
7 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
247
views
News: Online course on Genome Assembly and Annotation (1 seat left)
Galaxy GenomeAssembly GenomeAnnotation
7 weeks ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
186
views
News: NCBI's ClinVar now accepting somatic variation data
variation NCBI somatic-variants ClinVar
7 weeks ago by PeterC_NCBI ▴ 410
1
vote
1
reply
287
views
News: EMBL Course Hands-on course for sample preparation and data analysis in proteomics
EMBLProteomics
updated 8 weeks ago by • 0 • written 3 months ago by ▴ 10
1
vote
0
replies
213
views
News: Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses
nextflow pipeline workshop
8 weeks ago by David Langenberger 11k
0
votes
0
replies
166
views
News: Online course: Genome Assembly and Annotation - 3 seats left
Genome-Assembly Galaxy Genome-Annotation
updated 8 weeks ago by 43k • written 8 weeks ago by ★ 2.5k
0
votes
0
replies
171
views
News: Call for abstract: Quest for Orthologs meeting in Montreal
conference phylogeny comparativegenomics orthology evolution
8 weeks ago by sina.majidian ▴ 20
1
vote
0
replies
172
views
News: shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability terminal bash
9 weeks ago by David Langenberger 11k
1
vote
1
reply
215
views
News: Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser IGB
updated 9 weeks ago by 43k • written 9 weeks ago by • 0
0
votes
0
replies
202
views
News: Online course: Network Analysis in Systems Biology with R/Bioconductor
R RNA-seq Network-Analysis Bioconductor Systems-Biology
updated 9 weeks ago by 43k • written 9 weeks ago by ★ 2.5k
1,000 results • Page 1 of 20
Recent Votes
Answer: samtools 1.0 'index' : CSI index vs BAI index ?
Comment: Nextflow and self-made pipelines opinion
Comment: Nextflow and self-made pipelines opinion
What is Deepvariant default filtering values ?
Answer: Nextflow: how to get the process work dir, within the process
RNA-seq: Explain STAR quantMode geneCounts values
Answer: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru
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Recent Replies
Comment: How to analyze Infinium Mouse Methylation BeadChip array data? by Tawny ▴ 180
Did you get this figured out? I am having the same error in R.
Answer: JASPAR2024_getMatrixSet error by Raghad • 0
Try this: #Read the motifs library(JASPAR2024) library(TFBSTools) jaspar <- JASPAR2024() sq24 <- RSQLite::dbCo…
Answer: How to convert normalized BigWig file to count matrix? by ATpoint 82k
It's not possible. Gene counts are a region aggregate, bigwigs are a per-base readout and you cannot use normalized counts for mentioned to…
Comment: bcftools - reducing to "sites-only"? by Pierre Lindenbaum 161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: bcftools - reducing to "sites-only"? by Matthew • 0
Thank you Pierre! Not sure why I didn't notice that (I should have)
Comment: How to convert normalized BigWig file to count matrix? by Pierre Lindenbaum 161k
bigwig is chrom/start/end/value . what kind of matrix do you want ?
Comment: How to convert normalized BigWig file to count matrix? by feather-W • 0
I want to use the matrix derived from bigwig files to perform different analysis by DESeq2 or edgeR.
Answer: Have you ever obtained user guide of ExomeCNV? by michael.s ▴ 10
I have uploaded the ExomeCNV (v1.4) user manual [here][1]. [1]: https://fastupload.io/hZbU
Answer: Server or aws cloud- which one is better for gatk pipeline by GenoMax 142k
I assume you mean "server" as in local hardware that you own/control since "cloud" is a just bunch of servers on internet that you rent (pa…
Answer: Server or aws cloud- which one is better for gatk pipeline by Michael 54k
I think that is more a matter of convenience and legality. It mostly depends on who pays for it and what you prefer. Both solutions should …
Comment: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru by Pierre Lindenbaum 161k
> could you please explain what the collate does? http://www.htslib.org/doc/samtools-collate.html
Comment: ComBat_Seq stuck adjusting the data by Jaïr • 0
Same keeps happening to me; but it is weird, I corrected the batch effect with the same exact function a few months ago and worked fine. I …
Comment: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru by Lila M ★ 1.2k
Thank you for the feedback! I already used just the `samtools fastq -1 R1.fq.gz -2 R2.fq.gz -s Rx.fq.gz -0 R0.fq.gz`. Could you please exp…
Comment: Nextflow: how to get the process work dir, within the process by Pierre Lindenbaum 161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Answer: How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when ru by Pierre Lindenbaum 161k
faster use samtools collate+ fastq samtools collate -uOn128 in.bam TMPDIR | samtools fastq -1 R1.fq.gz -2 R2.fq.gz -s Rx.fq.gz -0 R…
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