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Comment: Comment: How should I make kallisto indexes?
14 days ago by bioinfo ▴ 150
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5
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465
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How should I make kallisto indexes?
kallisto
updated 14 days ago by ★ 6.0k • written 29 days ago by ▴ 150
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0
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311
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Comment: Comment: Can I compare kallisto counts from samples with different amount of reads?
27 days ago by bioinfo ▴ 150
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0
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306
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Comment: Comment: How to row normalize a matrixplot?
28 days ago by bioinfo ▴ 150
1
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2
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311
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Can I compare kallisto counts from samples with different amount of reads?
RNA-seq kallisto
27 days ago by bioinfo ▴ 150
2
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2
replies
306
views
How to row normalize a matrixplot?
scRNA-seq RNA-seq single-cell scanpy
28 days ago by bioinfo ▴ 150
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1
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238
views
How to do DE between cells expressing specific gene in scanpy?
scRNA-seq single-cell scanpy
updated 5 weeks ago by 43k • written 5 weeks ago by ▴ 150
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0
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320
views
Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
6 weeks ago by bioinfo ▴ 150
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1
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320
views
Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
6 weeks ago by bioinfo ▴ 150
0
votes
5
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320
views
How to compare bulk RNA seq data demultiplexed in different ways?
RNA-seq
updated 5 weeks ago by 43k • written 6 weeks ago by ▴ 150
0
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1
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532
views
Comment: Comment: How does kallisto handle multi mapped reads?
11 weeks ago by bioinfo ▴ 150
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1
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532
views
Comment: Comment: How does kallisto handle multi mapped reads?
11 weeks ago by bioinfo ▴ 150
3
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7
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532
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How does kallisto handle multi mapped reads?
kallisto
updated 11 weeks ago by ★ 6.0k • written 11 weeks ago by ▴ 150
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2
replies
391
views
How to add motifs in cellranger-arc reference?
gtf scRNAseq fasta cellranger
updated 26 days ago by • 0 • written 11 weeks ago by ▴ 150
0
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0
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293
views
How to do KEGG pathway analysis when I have a gene with multiple entrez IDs?
biomart kegg deseq2
5 months ago by bioinfo ▴ 150
4
votes
2
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638
views
Does DESeq2 correct for library size when importing the counts with DESeqDataSetFromMatrix?
rna-seq deseq2
updated 5 months ago by 19k • written 5 months ago by ▴ 150
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1
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1.0k
views
Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
6 months ago by bioinfo ▴ 150
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1
reply
1.0k
views
Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
6 months ago by bioinfo ▴ 150
0
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1
reply
1.0k
views
Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
6 months ago by bioinfo ▴ 150
3
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7
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1.0k
views
How much adapters is it ok to keep in my samples after RNA seq?
RNA-seq illumina adapters
updated 5 weeks ago by 43k • written 6 months ago by ▴ 150
0
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0
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694
views
Comment: Comment: Why am I getting different results with kallisto?
6 months ago by bioinfo ▴ 150
0
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1
reply
694
views
Comment: Comment: Why am I getting different results with kallisto?
6 months ago by bioinfo ▴ 150
0
votes
1
reply
694
views
Comment: Comment: Why am I getting different results with kallisto?
6 months ago by bioinfo ▴ 150
3
votes
4
replies
694
views
Why am I getting different results with kallisto?
kallisto
6 months ago by bioinfo ▴ 150
0
votes
1
reply
497
views
Comment: Comment: Are truseq adapter sequences picked up by FASTQC?
6 months ago by bioinfo ▴ 150
2
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3
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497
views
Are truseq adapter sequences picked up by FASTQC?
fastqc truseq
updated 6 months ago by 142k • written 6 months ago by ▴ 150
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0
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343
views
How to convert dataframe properly to anndata?
single-cell python anndata
updated 5 weeks ago by 43k • written 6 months ago by ▴ 150
0
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0
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339
views
How to import filtered_tf_bc_matrix and add it to my anndata object?
python anndata atac-seq
updated 5 weeks ago by 43k • written 6 months ago by ▴ 150
0
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0
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314
views
How to subsample ATAC fragment file?
single-cell atac-seq scRNA-seq
updated 5 weeks ago by 43k • written 6 months ago by ▴ 150
0
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0
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713
views
Comment: Comment: How to assign gene names after kallisto when I add GFP?
7 months ago by bioinfo ▴ 150
0
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1
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713
views
Comment: Comment: How to assign gene names after kallisto when I add GFP?
7 months ago by bioinfo ▴ 150
0
votes
2
replies
1.4k
views
Removing constant/zero columns for PCA?
R pca
updated 7 months ago by ★ 27k • written 7 months ago by ▴ 150
1
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4
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713
views
How to assign gene names after kallisto when I add GFP?
tximport RNA-seq kallisto
7 months ago by bioinfo ▴ 150
0
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0
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2.0k
views
Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
7 months ago by bioinfo ▴ 150
0
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0
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2.0k
views
Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
7 months ago by bioinfo ▴ 150
1
vote
8
replies
2.0k
views
How to plot proportion of cells in each cluster with scanpy?
scRNA-seq scanpy single-cell
7 months ago by bioinfo ▴ 150
0
votes
1
reply
2.0k
views
Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
7 months ago by bioinfo ▴ 150
0
votes
1
reply
2.0k
views
Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
7 months ago by bioinfo ▴ 150
0
votes
0
replies
674
views
Comment: Comment: How to calculate GC content of reads that mapped to a specific gene?
8 months ago by bioinfo ▴ 150
5
votes
2
replies
674
views
How to calculate GC content of reads that mapped to a specific gene?
STAR RNA-seq
8 months ago by bioinfo ▴ 150
0
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0
replies
924
views
Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
8 months ago by bioinfo ▴ 150
0
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1
reply
924
views
Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
8 months ago by bioinfo ▴ 150
0
votes
0
replies
924
views
Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
8 months ago by bioinfo ▴ 150
0
votes
1
reply
924
views
Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
8 months ago by bioinfo ▴ 150
0
votes
8
replies
924
views
Can the DESeq2 object for paired data be set with design= ~ batch + condition?
rna-seq deseq2
8 months ago by bioinfo ▴ 150
1
vote
1
reply
591
views
Do I need to perform basic filtering before using scrublet?
scanpy scrublet
updated 8 months ago by 142k • written 8 months ago by ▴ 150
0
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0
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975
views
Comment: Comment: Questions about per base sequence quality and GC content.
8 months ago by bioinfo ▴ 150
0
votes
1
reply
975
views
Comment: Comment: Questions about per base sequence quality and GC content.
8 months ago by bioinfo ▴ 150
0
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0
replies
1.0k
views
Comment: Comment: How to choose threshold for scrublet?
8 months ago by bioinfo ▴ 150
0
votes
2
replies
1.0k
views
How to choose threshold for scrublet?
rna-seq scrublet
8 months ago by bioinfo ▴ 150
137 results • Page 1 of 3
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