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Comment:
Comment: Multi-factor designs in DiffBind
5 months ago by
Rory Stark
★ 2.0k
1
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0
replies
507
views
Comment:
Comment: Consensus peaksets in DiffBind - conceptual questinos
5 months ago by
Rory Stark
★ 2.0k
0
votes
1
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507
views
Answer:
Answer: Consensus peaksets in DiffBind - conceptual questinos
5 months ago by
Rory Stark
★ 2.0k
1
vote
1
reply
857
views
Answer:
Answer: Multi-factor designs in DiffBind
5 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
333
views
Answer:
Answer: CHIPSEQ Analysis , DiffBind Parameters
5 months ago by
Rory Stark
★ 2.0k
1
vote
0
replies
794
views
Comment:
Comment: CHIPSEQ : Cut AND Run , DiffBind Parameters
5 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
5.3k
views
Comment:
Comment: Which method is the best for using in "dba.count" in Diffbind R package
5 months ago by
Rory Stark
★ 2.0k
1
vote
1
reply
508
views
Answer:
Answer: Diffbind low p-value but high FDR
5 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
1.9k
views
Comment:
Comment: DiffBind dba.analyze never finishes
5 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
2.6k
views
Comment:
Comment: Interpret plots from DiffBind
9 months ago by
Rory Stark
★ 2.0k
1
vote
1
reply
722
views
Answer:
Answer: The bam file used for DiffBind?
9 months ago by
Rory Stark
★ 2.0k
2
votes
1
reply
612
views
Answer:
Answer: How to compare peak profiles for a subset of ChIPseq genes
9 months ago by
Rory Stark
★ 2.0k
2
votes
1
reply
5.2k
views
Answer:
Answer: Help with DiffBind Generating report-based DBA object... Error: No valid contras
9 months ago by
Rory Stark
★ 2.0k
1
vote
1
reply
2.6k
views
Comment:
Comment: Interpret plots from DiffBind
10 months ago by
Rory Stark
★ 2.0k
1
vote
2
replies
2.6k
views
Comment:
Comment: Interpret plots from DiffBind
10 months ago by
Rory Stark
★ 2.0k
1
vote
1
reply
2.6k
views
Comment:
Comment: Interpret plots from DiffBind
10 months ago by
Rory Stark
★ 2.0k
1
vote
1
reply
2.6k
views
Comment:
Comment: Interpret plots from DiffBind
10 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
830
views
Answer:
Answer: How to interpret chipseq profile plot
10 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
495
views
Answer:
Answer: Profile Plot looks strange
10 months ago by
Rory Stark
★ 2.0k
2
votes
0
replies
792
views
Answer:
Answer: Sample sheet file for DiffBind
10 months ago by
Rory Stark
★ 2.0k
2
votes
1
reply
2.6k
views
Answer:
Answer: Interpret plots from DiffBind
10 months ago by
Rory Stark
★ 2.0k
0
votes
1
reply
2.0k
views
Comment:
Comment: DiffBind reports no significant differentially enriched peaks
10 months ago by
Rory Stark
★ 2.0k
2
votes
1
reply
1.1k
views
Answer:
Answer: Diff Bind Questions
11 months ago by
Rory Stark
★ 2.0k
2
votes
1
reply
883
views
Answer:
Answer: CHiP-Seq Questions
11 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
5.3k
views
Comment:
Comment: Which method is the best for using in "dba.count" in Diffbind R package
11 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
781
views
Answer:
Answer: Diffbind not calling sites as differentially bound
11 months ago by
Rory Stark
★ 2.0k
1
vote
0
replies
672
views
Answer:
Answer: Positive and negative value fold value in ATAC seq using DiffBind
12 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
2.0k
views
Comment:
Comment: Diffbind dba.count doesn't give FRiP score
11 months ago by
Rory Stark
★ 2.0k
2
votes
1
reply
2.0k
views
Answer:
Answer: Diffbind dba.count doesn't give FRiP score
13 months ago by
Rory Stark
★ 2.0k
0
votes
1
reply
2.0k
views
Comment:
Comment: Diffbind dba.count doesn't give FRiP score
13 months ago by
Rory Stark
★ 2.0k
1
vote
0
replies
3.0k
views
Comment:
Comment: DiffBind missing peaks and FRiP
13 months ago by
Rory Stark
★ 2.0k
1
vote
1
reply
2.0k
views
Comment:
Comment: Diffbind dba.count doesn't give FRiP score
13 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
3.0k
views
Comment:
Comment: DiffBind missing peaks and FRiP
13 months ago by
Rory Stark
★ 2.0k
1
vote
1
reply
2.0k
views
Answer:
Answer: Diffbind dba.count doesn't give FRiP score
13 months ago by
Rory Stark
★ 2.0k
0
votes
1
reply
898
views
Answer:
Answer: Diffbind: how to get raw read counts and normalized read counts
13 months ago by
Rory Stark
★ 2.0k
1
vote
0
replies
2.0k
views
Answer:
Answer: DiffBind reports no significant differentially enriched peaks
14 months ago by
Rory Stark
★ 2.0k
2
votes
0
replies
1.0k
views
Answer:
Answer: Chip-seq Analysis
14 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
1.3k
views
Comment:
Comment: DiffBind analysis report gives me two different outputs depending on when I appl
15 months ago by
Rory Stark
★ 2.0k
1
vote
1
reply
698
views
Answer:
Answer: Strange results from Diffbind-Deseq2 differential peak binding of cfChip-seq wit
updated 15 months ago by
Ram
43k • written 15 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
899
views
Answer:
Answer: Pipeline for quantitative ATAC-seq
15 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
1.7k
views
Answer:
Answer: DiffBind error: No contrasts added. There must be at least two sample groups wit
17 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
1.1k
views
Answer:
Answer: RiP RLE normalisation using spike-in peaks in DiffBind for ChIP-seq
17 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
2.7k
views
Comment:
Comment: DiffBind dba.count() BiocParallel error
17 months ago by
Rory Stark
★ 2.0k
1
vote
1
reply
1.1k
views
Answer:
Answer: Diffbind raw read counts
18 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
1.0k
views
Comment:
Comment: How to extract binding affinity matrix in Diffbind
19 months ago by
Rory Stark
★ 2.0k
0
votes
1
reply
1.0k
views
Answer:
Answer: How to extract binding affinity matrix in Diffbind
19 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
4.2k
views
Comment:
Comment: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
20 months ago by
Rory Stark
★ 2.0k
6
votes
7
replies
4.2k
views
News:
New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind
ChIP-seq
deepTools
visualization
ATAC-seq
20 months ago by
Rory Stark
★ 2.0k
2
votes
0
replies
4.2k
views
Answer:
Answer: ChIPQC BiocParallel errors
21 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
2.7k
views
Answer:
Answer: DiffBind dba.count() BiocParallel error
21 months ago by
Rory Stark
★ 2.0k
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