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Comment:
Comment: Getting the coding_sequence.fasta from the .gff file from the AUGUSTUS gene pred
17 hours ago by
Juke34
8.6k
3
votes
0
replies
367
views
Answer:
Answer: Assume "yes" as the answer to any prompts with bioconda
25 days ago by
Juke34
8.6k
0
votes
1
reply
357
views
Comment:
Comment: Why are gene models from JGI non-sense when using AGAT to to extract proteins?
6 weeks ago by
Juke34
8.6k
0
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0
replies
497
views
Answer:
Answer: Genbank Bacteriophage Genome Submission - Internal stop codons in CDS sequences
7 weeks ago by
Juke34
8.6k
3
votes
0
replies
289
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Answer:
Answer: why there is an asterisk symbol at the end of each proteins sequences offasta fi
7 weeks ago by
Juke34
8.6k
1
vote
1
reply
9.7k
views
Comment:
Comment: Create de novo repeat library
8 weeks ago by
Juke34
8.6k
1
vote
0
replies
773
views
Answer:
Answer: Intersect gene IDs list and GFF3 to get the annotation.
8 weeks ago by
Juke34
8.6k
0
votes
0
replies
410
views
Answer:
Answer: How can I get the sequences of the first 20nt of introns and the last 250nt of i
11 weeks ago by
Juke34
8.6k
1
vote
0
replies
942
views
Comment:
Comment: Trying to wrap my head around Illumina paired end sequencing
3 months ago by
Juke34
8.6k
0
votes
1
reply
651
views
Comment:
Comment: Gemoma error with gff file
4 months ago by
Juke34
8.6k
1
vote
0
replies
1.8k
views
Comment:
Comment: Assistance with Fungal Genome Annotation Using Maker and BLAST
6 months ago by
Juke34
8.6k
1
vote
1
reply
1.8k
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Comment:
Comment: Assistance with Fungal Genome Annotation Using Maker and BLAST
6 months ago by
Juke34
8.6k
1
vote
1
reply
1.8k
views
Comment:
Comment: Assistance with Fungal Genome Annotation Using Maker and BLAST
6 months ago by
Juke34
8.6k
0
votes
1
reply
1.0k
views
Comment:
Comment: file conversion from gtf to gff3 for evidence modeler
6 months ago by
Juke34
8.6k
0
votes
1
reply
1.0k
views
Comment:
Comment: file conversion from gtf to gff3 for evidence modeler
6 months ago by
Juke34
8.6k
1
vote
1
reply
917
views
Answer:
Answer: Adapters finder
7 months ago by
Juke34
8.6k
0
votes
0
replies
792
views
Comment:
Comment: Converting GFF to GTF
7 months ago by
Juke34
8.6k
2
votes
1
reply
557
views
Answer:
Answer: Fastp
7 months ago by
Juke34
8.6k
0
votes
1
reply
656
views
Comment:
Comment: Samtools mpileup for RNA Editing levels generating empty output file
7 months ago by
Juke34
8.6k
1
vote
0
replies
333
views
Comment:
Comment: Luciferase T7 Control GTF file
7 months ago by
Juke34
8.6k
0
votes
1
reply
1.3k
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Comment:
Comment: Getting the overlap between two GTF files
7 months ago by
Juke34
8.6k
0
votes
1
reply
899
views
Comment:
Comment: how to identify uniq genes between two gff files.
7 months ago by
Juke34
8.6k
0
votes
1
reply
899
views
Answer:
Answer: how to identify uniq genes between two gff files.
7 months ago by
Juke34
8.6k
1
vote
1
reply
996
views
Answer:
Answer: How to check RNAseq support for annotated genes?
7 months ago by
Juke34
8.6k
1
vote
1
reply
1.8k
views
Answer:
Answer: Assistance with Fungal Genome Annotation Using Maker and BLAST
7 months ago by
Juke34
8.6k
2
votes
2
replies
3.5k
views
Answer:
Answer: A list of technical advantages of Snakemake over Nextflow | Cloud solution for S
7 months ago by
Juke34
8.6k
1
vote
1
reply
22k
views
Comment:
Comment: Is there a tool that sorts gtf files?
8 months ago by
Juke34
8.6k
0
votes
0
replies
6.0k
views
Answer:
Answer: Convert bed12 to GFF
8 months ago by
Juke34
8.6k
2
votes
0
replies
534
views
Answer:
Answer: MAKER: how to use RNAseq data to assist annotation?
8 months ago by
Juke34
8.6k
0
votes
0
replies
471
views
Comment:
Comment: How to set weight for merge legacy annotations
8 months ago by
Juke34
8.6k
3
votes
1
reply
653
views
Tutorial:
Coordinate Systems and genomic variant description
coordinate-system
HGVS
normalization
VCF
updated 9 months ago by
Ram
43k • written 9 months ago by
Juke34
8.6k
0
votes
0
replies
1.1k
views
Answer:
Answer: The nightmare of coordinate systems
9 months ago by
Juke34
8.6k
1
vote
1
reply
1.1k
views
Answer:
Answer: Counting RNA-seq reads for more features than GTF files contain
9 months ago by
Juke34
8.6k
1
vote
0
replies
896
views
Comment:
Comment: Contig order rearranged agat
9 months ago by
Juke34
8.6k
0
votes
1
reply
896
views
Comment:
Comment: Contig order rearranged agat
10 months ago by
Juke34
8.6k
1
vote
1
reply
869
views
Comment:
Comment: gff3ToGenePred
10 months ago by
Juke34
8.6k
2
votes
0
replies
1.1k
views
Comment:
Comment: adding features to gtf file using agat tool function
10 months ago by
Juke34
8.6k
1
vote
1
reply
869
views
Comment:
Comment: gff3ToGenePred
10 months ago by
Juke34
8.6k
0
votes
0
replies
1.2k
views
Comment:
Comment: error installing SAMtools and bamtools
10 months ago by
Juke34
8.6k
4
votes
2
replies
1.1k
views
Answer:
Answer: adding features to gtf file using agat tool function
10 months ago by
Juke34
8.6k
2
votes
3
replies
3.3k
views
Comment:
Comment: How to add "transcript" feature to a gtf file?
10 months ago by
Juke34
8.6k
2
votes
1
reply
3.3k
views
Comment:
Comment: How to add "transcript" feature to a gtf file?
10 months ago by
Juke34
8.6k
1
vote
1
reply
3.3k
views
Comment:
Comment: How to add "transcript" feature to a gtf file?
10 months ago by
Juke34
8.6k
2
votes
1
reply
3.3k
views
Comment:
Comment: How to add "transcript" feature to a gtf file?
10 months ago by
Juke34
8.6k
2
votes
1
reply
948
views
Answer:
Answer: gff3 to gtf
11 months ago by
Juke34
8.6k
0
votes
0
replies
870
views
Comment:
Comment: Rename GFF3 File
11 months ago by
Juke34
8.6k
1
vote
1
reply
948
views
Comment:
Comment: gff3 to gtf
11 months ago by
Juke34
8.6k
0
votes
0
replies
1.7k
views
Comment:
Comment: How to extract summary statistics from GFF3 /GTF file?
12 months ago by
Juke34
8.6k
1
vote
1
reply
1.7k
views
Comment:
Comment: How to extract summary statistics from GFF3 /GTF file?
12 months ago by
Juke34
8.6k
1
vote
0
replies
482
views
Answer:
Answer: error when converting hmmer table to off table
12 months ago by
Juke34
8.6k
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