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5
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169
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Answer: Answer: EdgeR - relationship between logFC and coefficients
2 days ago by Gordon Smyth ★ 7.1k
1
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1
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427
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Comment: Comment: Design matrix Differential expression analysis
5 days ago by Gordon Smyth ★ 7.1k
2
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1
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427
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Answer: Answer: Design matrix Differential expression analysis
8 days ago by Gordon Smyth ★ 7.1k
0
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1
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425
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Comment: Comment: Limma Analysis Agilent Microarray Data (GPL1708)
12 days ago by Gordon Smyth ★ 7.1k
0
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0
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1.3k
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Answer: Answer: Differential Expression using Isoseq-supplemented reference transcriptome
13 days ago by Gordon Smyth ★ 7.1k
1
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1
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425
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Answer: Answer: Limma Analysis Agilent Microarray Data (GPL1708)
15 days ago by Gordon Smyth ★ 7.1k
0
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1
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288
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Answer: Answer: Correct way to compare multiple treaments between RNA-Seq samples using edgeR?
15 days ago by Gordon Smyth ★ 7.1k
4
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1
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337
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Answer: Answer: How to use limma to find differentially expressed genes in response to a continu
15 days ago by Gordon Smyth ★ 7.1k
0
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0
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272
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Comment: Comment: permutation test in edgeR
19 days ago by Gordon Smyth ★ 7.1k
1
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0
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447
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Comment: Comment: Difference when using difference number of pathways score to compare between 3 g
21 days ago by Gordon Smyth ★ 7.1k
1
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0
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296
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Answer: Answer: Removing Illumina microarray probes with no expression HumanHT-12v4
21 days ago by Gordon Smyth ★ 7.1k
2
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1
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416
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Answer: Answer: differential gene expression analysis when not all samples have an untreated cou
24 days ago by Gordon Smyth ★ 7.1k
1
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1
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431
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Comment: Comment: Limma compare between 3 conditions vs 2 conditions
25 days ago by Gordon Smyth ★ 7.1k
2
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0
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271
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Answer: Answer: Choosing an FC Threshold
6 weeks ago by Gordon Smyth ★ 7.1k
1
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0
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1.1k
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Comment: Comment: Shrink logFC values after edgeR
7 weeks ago by Gordon Smyth ★ 7.1k
0
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1
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490
views
Comment: Comment: 'Invalid parameter' error to generate a count matrix using featurecounts
7 weeks ago by Gordon Smyth ★ 7.1k
0
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1
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490
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Answer: Answer: 'Invalid parameter' error to generate a count matrix using featurecounts
7 weeks ago by Gordon Smyth ★ 7.1k
1
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0
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463
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Comment: Comment: Differential express genes in imbalance groups
7 weeks ago by Gordon Smyth ★ 7.1k
3
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3
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463
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Answer: Answer: Differential express genes in imbalance groups
7 weeks ago by Gordon Smyth ★ 7.1k
0
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0
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222
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Comment: Comment: Computing mid parent value for DE analysis
9 weeks ago by Gordon Smyth ★ 7.1k
1
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0
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696
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Answer: Answer: RNA-seq - Creating SAF from NCBI gff for Subread featureCounts - keep 'gene' or
10 weeks ago by Gordon Smyth ★ 7.1k
1
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0
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1.2k
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Answer: Answer: MA graphs for EdgeR and Voom vary
10 weeks ago by Gordon Smyth ★ 7.1k
2
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0
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1.1k
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Comment: Comment: Shrink logFC values after edgeR
9 weeks ago by Gordon Smyth ★ 7.1k
2
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0
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734
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Answer: Answer: Seeking Beginner-Friendly Resources for Deepening Understanding of Bioinformatic
10 weeks ago by Gordon Smyth ★ 7.1k
0
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0
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485
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Comment: Comment: Does the order of the batch variable matter in Limma design matrix?
10 weeks ago by Gordon Smyth ★ 7.1k
0
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0
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3.9k
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Comment: Comment: Can one plot % of variance using the plotMDS function?
10 weeks ago by Gordon Smyth ★ 7.1k
1
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1
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485
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Answer: Answer: Does the order of the batch variable matter in Limma design matrix?
7 weeks ago by Gordon Smyth ★ 7.1k
6
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1
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486
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Answer: Answer: Bayesian Differential Expression
12 weeks ago by Gordon Smyth ★ 7.1k
0
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0
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465
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Comment: Comment: filtering lowly expressed reads
3 months ago by Gordon Smyth ★ 7.1k
0
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0
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246
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Comment: Comment: Design matrix after RUVg correction
3 months ago by Gordon Smyth ★ 7.1k
2
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0
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2.8k
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Comment: Comment: Converting LogCPM to raw counts for DESEQ2
3 months ago by Gordon Smyth ★ 7.1k
1
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0
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931
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Answer: Answer: EdgeR: upregulated with respect to what group?
3 months ago by Gordon Smyth ★ 7.1k
0
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0
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1.3k
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Answer: Answer: Is there a program to average read counts from technical replicates?
3 months ago by Gordon Smyth ★ 7.1k
0
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0
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913
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Comment: Comment: How do I work out which condition the genes are down-regulated in?
3 months ago by Gordon Smyth ★ 7.1k
0
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0
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913
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Answer: Answer: How do I work out which condition the genes are down-regulated in?
3 months ago by Gordon Smyth ★ 7.1k
0
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0
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1.6k
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Answer: Answer: positive and negative Fold Change glmLRT test
3 months ago by Gordon Smyth ★ 7.1k
0
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0
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752
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Answer: Answer: logFoldChange computed by EdgeR different from naive log2FCcomputed based on rea
3 months ago by Gordon Smyth ★ 7.1k
2
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1
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1.1k
views
Answer: Answer: Shrink logFC values after edgeR
3 months ago by Gordon Smyth ★ 7.1k
1
vote
1
reply
501
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Comment: Comment: Differing p-value cutoffs of limma derived DEGs in volcanoplots
3 months ago by Gordon Smyth ★ 7.1k
3
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1
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501
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Answer: Answer: Differing p-value cutoffs of limma derived DEGs in volcanoplots
3 months ago by Gordon Smyth ★ 7.1k
0
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0
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312
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
3 months ago by Gordon Smyth ★ 7.1k
1
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0
replies
282
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Comment: Comment: Gene expression of microarray data
3 months ago by Gordon Smyth ★ 7.1k
0
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1
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603
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Comment: Comment: Differential RNA editing using edgeR
4 months ago by Gordon Smyth ★ 7.1k
2
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1
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603
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Answer: Answer: Differential RNA editing using edgeR
4 months ago by Gordon Smyth ★ 7.1k
0
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1
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537
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Comment: Comment: how to start DEG analysis after featurecounts
4 months ago by Gordon Smyth ★ 7.1k
0
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0
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1.6k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
8 days ago by Gordon Smyth ★ 7.1k
0
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1
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1.6k
views
Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.1k
0
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0
replies
1.6k
views
Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.1k
0
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1
reply
1.6k
views
Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.1k
1
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0
replies
1.6k
views
Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.1k
506 results • Page 1 of 11
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