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219
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Comment: Comment: ComplexHeatmap anno_mark position changes with height of gene expression heatmap
5 weeks ago by CTLong ▴ 110
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0
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119
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WGCNA modulePreservation on three expression sets
WGCNA
6 weeks ago by CTLong ▴ 110
1
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0
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212
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Comment: Comment: Tool for gene function identification
7 weeks ago by CTLong ▴ 110
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0
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256
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Comment: Comment: Gene set to perform GSVA
8 weeks ago by CTLong ▴ 110
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2
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256
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Gene set to perform GSVA
GSVA
8 weeks ago by CTLong ▴ 110
1
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1
reply
219
views
ComplexHeatmap anno_mark position changes with height of gene expression heatmap
ComplexHeatmap
5 weeks ago by CTLong ▴ 110
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0
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26k
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Comment: Comment: Gene Set Enrichment Analysis after DESeq2
10 weeks ago by CTLong ▴ 110
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0
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129
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Interpret ImpulseDE2 output?
RNA-seq
11 weeks ago by CTLong ▴ 110
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1
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516
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Comment: Comment: Does the order of the batch variable matter in Limma design matrix?
11 weeks ago by CTLong ▴ 110
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3
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516
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Does the order of the batch variable matter in Limma design matrix?
Batch
updated 9 weeks ago by ★ 7.2k • written 12 weeks ago by ▴ 110
0
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1
reply
368
views
Speed up Seurat FindClusters execution?
Seurat
updated 12 weeks ago by 6.4k • written 12 weeks ago by ▴ 110
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1
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521
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Answer: Answer: Differential gene expression design using Deseq2
updated 3 months ago by 44k • written 3 months ago by ▴ 110
1
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1
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292
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Gene expression of microarray data
Microarray
updated 4 months ago by ★ 7.2k • written 4 months ago by ▴ 110
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0
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484
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Answer: Answer: filtering lowly expressed reads
4 months ago by CTLong ▴ 110
0
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0
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443
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Comment: Comment: Estimating the similarity of an RNA-seq sample based on a reference expression p
4 months ago by CTLong ▴ 110
1
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3
replies
443
views
Estimating the similarity of an RNA-seq sample based on a reference expression profile
RNA-seq
4 months ago by CTLong ▴ 110
0
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0
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280
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Answer: Answer: insilico prediction of disulfide bonds in protein
4 months ago by CTLong ▴ 110
1
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1
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518
views
Comment: Comment: RNA-seq deconvolution algorithm that takes into account weight of marker gene
4 months ago by CTLong ▴ 110
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1
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518
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Comment: Comment: RNA-seq deconvolution algorithm that takes into account weight of marker gene
4 months ago by CTLong ▴ 110
2
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5
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518
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RNA-seq deconvolution algorithm that takes into account weight of marker gene
RNA-seq
updated 4 months ago by ★ 1.4k • written 4 months ago by ▴ 110
0
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1
reply
574
views
Comment: Comment: Difference between clipping and without clipping in Fastq-dump
4 months ago by CTLong ▴ 110
1
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3
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574
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Difference between clipping and without clipping in Fastq-dump
SRAtoolkit
updated 4 months ago by 82k • written 4 months ago by ▴ 110
0
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0
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565
views
Comment: Comment: Obtain fitted data from DESeq2
4 months ago by CTLong ▴ 110
0
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1
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565
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Comment: Comment: Obtain fitted data from DESeq2
4 months ago by CTLong ▴ 110
2
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4
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565
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Obtain fitted data from DESeq2
DESeq2
4 months ago by CTLong ▴ 110
0
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0
replies
509
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Comment: Comment: STAR SjdbOverHang specification
5 months ago by CTLong ▴ 110
0
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1
reply
509
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Comment: Comment: STAR SjdbOverHang specification
5 months ago by CTLong ▴ 110
0
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3
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509
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STAR SjdbOverHang specification
STAR
5 months ago by CTLong ▴ 110
2
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0
replies
647
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Answer: Answer: Condition specific marker detection and problem with the distribution of cells f
5 months ago by CTLong ▴ 110
1
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1
reply
9.3k
views
Answer: Answer: ChatGPT optimized for bioinformatics questions
5 months ago by CTLong ▴ 110
0
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1
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522
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Answer: Answer: Tutorials for Spatial Transcriptomics
5 months ago by CTLong ▴ 110
2
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1
reply
511
views
Answer: Answer: how to draw the valcano plot for DEGs in a different way
updated 5 months ago by 44k • written 5 months ago by ▴ 110
0
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0
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580
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Comment: Comment: Best method for batch correction of three datasets
5 months ago by CTLong ▴ 110
2
votes
2
replies
580
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Best method for batch correction of three datasets
RNA-seq
updated 5 months ago by 82k • written 5 months ago by ▴ 110
0
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0
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888
views
Comment: Comment: Can I use TCGA-LUAD RNAseq count that had already normalized by RSEM in Limma-vo
5 months ago by CTLong ▴ 110
3
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4
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667
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Is bisulfite-seq data from different studies comparable with each other?
Methylation
updated 5 months ago by ▴ 10 • written 5 months ago by ▴ 110
0
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1
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888
views
Comment: Comment: Can I use TCGA-LUAD RNAseq count that had already normalized by RSEM in Limma-vo
5 months ago by CTLong ▴ 110
0
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0
replies
736
views
Comment: Comment: Is there a need to batch correct FPKM or TPM values for within sample comparison
5 months ago by CTLong ▴ 110
0
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0
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736
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Comment: Comment: Is there a need to batch correct FPKM or TPM values for within sample comparison
5 months ago by CTLong ▴ 110
4
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4
replies
736
views
Is there a need to batch correct FPKM or TPM values for within sample comparison
Batch correction
5 months ago by CTLong ▴ 110
0
votes
1
reply
667
views
Comment: Comment: Is bisulfite-seq data from different studies comparable with each other?
5 months ago by CTLong ▴ 110
1
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0
replies
414
views
Comment: Comment: Harmony integration PC variance explained
5 months ago by CTLong ▴ 110
0
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0
replies
620
views
Comment: Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
5 months ago by CTLong ▴ 110
0
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1
reply
620
views
Comment: Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
5 months ago by CTLong ▴ 110
0
votes
1
reply
620
views
Comment: Comment: Discrepancy in total number of bases in trimmed read1 and read2 files after BBDu
5 months ago by CTLong ▴ 110
1
vote
6
replies
620
views
Discrepancy in total number of bases in trimmed read1 and read2 files after BBDuk
bbduk
5 months ago by CTLong ▴ 110
1
vote
0
replies
772
views
Comment: Comment: Parsing XML file from dbGaP
6 months ago by CTLong ▴ 110
0
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1
reply
772
views
Comment: Comment: Parsing XML file from dbGaP
6 months ago by CTLong ▴ 110
0
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1
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772
views
Comment: Comment: Parsing XML file from dbGaP
6 months ago by CTLong ▴ 110
1
vote
6
replies
772
views
Parsing XML file from dbGaP
XML
6 months ago by CTLong ▴ 110
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