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4
votes
6
replies
3.8k
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Conda is installing older version of Spades even though latest version is there in the bioconda repository
python conda spades
updated 7 months ago by 43k • written 14 months ago by ▴ 100
3
votes
4
replies
775
views
IsoformSwitchAnalyzeR Error in reading GTF file
R IsoformSwitchAnalyzeR
10 months ago by VenGeno ▴ 100
3
votes
0
replies
775
views
Answer: Answer: IsoformSwitchAnalyzeR Error in reading GTF file
10 months ago by VenGeno ▴ 100
0
votes
1
reply
775
views
Comment: Comment: IsoformSwitchAnalyzeR Error in reading GTF file
10 months ago by VenGeno ▴ 100
0
votes
1
reply
3.8k
views
Comment: Comment: Conda is installing older version of Spades even though latest version is there
14 months ago by VenGeno ▴ 100
0
votes
1
reply
3.8k
views
Comment: Comment: Conda is installing older version of Spades even though latest version is there
14 months ago by VenGeno ▴ 100
0
votes
0
replies
508
views
Comment: Comment: Extracting unconventionally spliced transcripts from RNASeq dataset
2.0 years ago by VenGeno ▴ 100
0
votes
2
replies
508
views
Extracting unconventionally spliced transcripts from RNASeq dataset
RNASeq
2.0 years ago by VenGeno ▴ 100
2
votes
3
replies
744
views
agat_convert_sp_gff2gtf: Is there a way to retain identical isoforms?
AGAT
2.0 years ago by VenGeno ▴ 100
1
vote
0
replies
744
views
Answer: Answer: agat_convert_sp_gff2gtf: Is there a way to retain identical isoforms?
2.0 years ago by VenGeno ▴ 100
0
votes
0
replies
744
views
Comment: Comment: agat_convert_sp_gff2gtf: Is there a way to retain identical isoforms?
2.0 years ago by VenGeno ▴ 100
0
votes
0
replies
527
views
Comment: Comment: IsoformSwitchAnalyzeR: object 'analysisAllIsoformsWithoutORF' not found
2.0 years ago by VenGeno ▴ 100
2
votes
2
replies
527
views
IsoformSwitchAnalyzeR: object 'analysisAllIsoformsWithoutORF' not found
splicing IsoformSwitchAnalyzeR Alternative
2.0 years ago by VenGeno ▴ 100
0
votes
0
replies
704
views
Comment: Comment: RNASeq: Adapter Trimming Rubisco small subunit appears as an overrepresentativ
2.1 years ago by VenGeno ▴ 100
0
votes
1
reply
704
views
Comment: Comment: RNASeq: Adapter Trimming Rubisco small subunit appears as an overrepresentativ
2.1 years ago by VenGeno ▴ 100
1
vote
4
replies
704
views
RNASeq: Adapter Trimming Rubisco small subunit appears as an overrepresentative sequence
FastQC TrimGalore
2.1 years ago by VenGeno ▴ 100
0
votes
1
reply
614
views
Comment: Comment: Creating a gene version of the Kallisto Gene Matrix: Perl
2.1 years ago by VenGeno ▴ 100
2
votes
2
replies
614
views
Creating a gene version of the Kallisto Gene Matrix: Perl
perl
2.1 years ago by VenGeno ▴ 100
0
votes
1
reply
1.1k
views
Comment: Comment: ggplot2 : Volcano Plot. Weird connecting lines are appearing
2.1 years ago by VenGeno ▴ 100
7
votes
4
replies
1.1k
views
ggplot2 : Volcano Plot. Weird connecting lines are appearing
ggplot2 volcano plot R
updated 2.1 years ago by 21k • written 2.1 years ago by ▴ 100
8
votes
11
replies
3.3k
views
6 follow
Are there any alternatives to Liftoff - Mapping annotations (GFF/GTF) between assemblies
annotations mapping GTF GFF3
updated 3 months ago by 43k • written 2.7 years ago by ▴ 100
0
votes
0
replies
434
views
IQTree: Calculating the Mean Branch Length
IQTree ML Phylogney
2.2 years ago by VenGeno ▴ 100
0
votes
0
replies
3.3k
views
Comment: Comment: Are there any alternatives to Liftoff - Mapping annotations (GFF/GTF) between as
2.6 years ago by VenGeno ▴ 100
0
votes
1
reply
3.3k
views
Comment: Comment: Are there any alternatives to Liftoff - Mapping annotations (GFF/GTF) between as
2.6 years ago by VenGeno ▴ 100
4
votes
12
replies
3.1k
views
6 follow
snpeff : wont recognize the gtf or gff3 files (runtime exception)
GTF GFF3 snpeff
updated 11 months ago by ▴ 30 • written 2.7 years ago by ▴ 100
4
votes
1
reply
3.1k
views
Answer: Answer: snpeff : wont recognize the gtf or gff3 files (runtime exception)
2.7 years ago by VenGeno ▴ 100
0
votes
0
replies
3.3k
views
Comment: Comment: Are there any alternatives to Liftoff - Mapping annotations (GFF/GTF) between as
2.7 years ago by VenGeno ▴ 100
0
votes
1
reply
3.3k
views
Comment: Comment: Are there any alternatives to Liftoff - Mapping annotations (GFF/GTF) between as
2.7 years ago by VenGeno ▴ 100
0
votes
0
replies
3.1k
views
Comment: Comment: snpeff : wont recognize the gtf or gff3 files (runtime exception)
2.7 years ago by VenGeno ▴ 100
0
votes
2
replies
3.1k
views
Comment: Comment: snpeff : wont recognize the gtf or gff3 files (runtime exception)
2.7 years ago by VenGeno ▴ 100
0
votes
2
replies
3.1k
views
Comment: Comment: snpeff : wont recognize the gtf or gff3 files (runtime exception)
2.7 years ago by VenGeno ▴ 100
0
votes
0
replies
3.1k
views
Comment: Comment: snpeff : wont recognize the gtf or gff3 files (runtime exception)
2.7 years ago by VenGeno ▴ 100
0
votes
1
reply
1.9k
views
Comment: Comment: Blank output When converting GFF3 file to GTF using either gffread or AGAT
2.7 years ago by VenGeno ▴ 100
0
votes
1
reply
1.9k
views
Comment: Comment: Blank output When converting GFF3 file to GTF using either gffread or AGAT
2.7 years ago by VenGeno ▴ 100
5
votes
6
replies
1.9k
views
Blank output When converting GFF3 file to GTF using either gffread or AGAT
agat gffread conversion
updated 2.7 years ago by 8.6k • written 2.7 years ago by ▴ 100
0
votes
1
reply
658
views
Extracting variations in the gene regions and from 100 bp of gene boundary from multiple VCF files
VCF Variations
updated 2.7 years ago by ★ 1.1k • written 2.7 years ago by ▴ 100
6
votes
17
replies
2.4k
views
How to trim a GFF3 file based on specific coordinates?
Annotations GFF3
updated 2.8 years ago by 13k • written 2.8 years ago by ▴ 100
0
votes
0
replies
2.4k
views
Comment: Comment: How to trim a GFF3 file based on specific coordinates?
2.8 years ago by VenGeno ▴ 100
0
votes
0
replies
2.4k
views
Comment: Comment: How to trim a GFF3 file based on specific coordinates?
2.8 years ago by VenGeno ▴ 100
0
votes
0
replies
989
views
Comment: Comment: Variant calling from 5 MB regions coming from contrasting cultivars
2.8 years ago by VenGeno ▴ 100
0
votes
1
reply
989
views
Comment: Comment: Variant calling from 5 MB regions coming from contrasting cultivars
2.8 years ago by VenGeno ▴ 100
1
vote
4
replies
989
views
Variant calling from 5 MB regions coming from contrasting cultivars
calling alignment variant
2.8 years ago by VenGeno ▴ 100
0
votes
1
reply
926
views
Automatically retrieving interpro domain information ( to combine with phylogentic tree) - PhyloXML
phylogeny phyloxml domain interpro
updated 4.7 years ago by ▴ 40 • written 5.1 years ago by ▴ 100
1
vote
0
replies
2.2k
views
Comment: Comment: Looking for DNA base composition Visualisation tool
updated 2.1 years ago by 43k • written 9.2 years ago by ▴ 100
6
votes
2
replies
2.2k
views
Looking for DNA base composition Visualisation tool
base-composition data-visualization DNA
updated 2.1 years ago by 43k • written 9.2 years ago by ▴ 100
2
votes
2
replies
2.2k
views
Consurf: Generating an image similar to the one that is given below
consurf protein
updated 3.1 years ago by 43k • written 9.6 years ago by ▴ 100
2
votes
0
replies
2.2k
views
Answer: C: Consurf: Generating an image similar to the one that is given below
updated 3.1 years ago by 43k • written 9.6 years ago by ▴ 100
47 results • Page 1 of 1
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