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replies
370
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Looking for an explanation as to what the Peak Score is from HOMER, not finding any answers on Biostars yet
Homer
ATAC-seq
24 days ago by
Ronin
• 0
0
votes
0
replies
192
views
I am getting more annotation hits from HOMER than I have actual peaks. Is that normal?
ATAC-seq
HOMER
29 days ago by
Ronin
• 0
0
votes
0
replies
350
views
Looking to improve my understanding of Homer's mergePeaks function: unclear of how the merged file is created?
Homer
ATACseq
5 weeks ago by
Ronin
• 0
0
votes
0
replies
327
views
Comment:
Comment: I am unsure why my files are not being accepted in bedtools jaccard, any tips?
5 weeks ago by
Ronin
• 0
2
votes
4
replies
327
views
I am unsure why my files are not being accepted in bedtools jaccard, any tips?
bedtools
5 weeks ago by
Ronin
• 0
0
votes
0
replies
630
views
I performed Homer's annotatePeaks.pl on multiple tissues, yet when I run annotatePeaks on the merged tissues, I get fewer total annotated peaks. Is t…
Homer
ATACseq
6 weeks ago by
Ronin
• 0
0
votes
1
reply
156
views
Wanting to make a Venn diagram of ATACseq peak files, unsure of where to start
ATAC-seq
updated 6 weeks ago by
Yogi
▴ 70 • written 6 weeks ago by
Ronin
• 0
0
votes
1
reply
541
views
Comment:
Comment: bedToBigBed error, what am I doing wrong?
7 weeks ago by
Ronin
• 0
0
votes
1
reply
541
views
Comment:
Comment: bedToBigBed error, what am I doing wrong?
7 weeks ago by
Ronin
• 0
0
votes
2
replies
541
views
Comment:
Comment: bedToBigBed error, what am I doing wrong?
7 weeks ago by
Ronin
• 0
3
votes
11
replies
541
views
bedToBigBed error, what am I doing wrong?
Homer
software-error
UCSC
updated 7 weeks ago by
Pierre Lindenbaum
161k • written 7 weeks ago by
Ronin
• 0
0
votes
0
replies
396
views
Comment:
Comment: I do not understand how to get total peaks from MACS2 shown to me. What mistake(
8 weeks ago by
Ronin
• 0
1
vote
2
replies
396
views
I do not understand how to get total peaks from MACS2 shown to me. What mistake(s) am I making here?
ATACseq
MACS
8 weeks ago by
Ronin
• 0
0
votes
0
replies
304
views
Comment:
Comment: Homer findGO.pl questions
11 weeks ago by
Ronin
• 0
0
votes
2
replies
304
views
Homer findGO.pl questions
ATACseq
11 weeks ago by
Ronin
• 0
0
votes
0
replies
149
views
Interpreting HOMER getDifferentialPeaks.pl output columns
ATACseq
3 months ago by
Ronin
• 0
0
votes
2
replies
263
views
Issue with chromstaR ATACseq, unable to find genome?
ATAC-seq
updated 4 months ago by
Ram
43k • written 4 months ago by
Ronin
• 0
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