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1
vote
0
replies
370
views
Answer:
Answer: Output checks during Snakemake pipeline
8 weeks ago by
Eric Lim
★ 2.2k
0
votes
0
replies
226
views
Comment:
Comment: usually retained introns
9 weeks ago by
Eric Lim
★ 2.2k
0
votes
0
replies
491
views
Comment:
Comment: Snakemake paralellize
9 months ago by
Eric Lim
★ 2.2k
1
vote
1
reply
804
views
Comment:
Comment: Suggestions for a simpler solution for collecting snakemake rule output in a tex
9 months ago by
Eric Lim
★ 2.2k
1
vote
1
reply
1.7k
views
Comment:
Comment: Snakemake issue with wrappers
12 months ago by
Eric Lim
★ 2.2k
0
votes
0
replies
1.2k
views
Comment:
Comment: Wildcards in Snakemake
12 months ago by
Eric Lim
★ 2.2k
0
votes
1
reply
1.2k
views
Comment:
Comment: Wildcards in Snakemake
12 months ago by
Eric Lim
★ 2.2k
1
vote
0
replies
2.5k
views
Answer:
Answer: Don't choose Novogene for your sequencing projects
15 months ago by
Eric Lim
★ 2.2k
1
vote
0
replies
951
views
Comment:
Comment: Identify Alternative Splicing Event using exon and junction count table
15 months ago by
Eric Lim
★ 2.2k
0
votes
1
reply
936
views
Comment:
Comment: take user options before calling snakemake
18 months ago by
Eric Lim
★ 2.2k
0
votes
1
reply
1.1k
views
Comment:
Comment: Do we need replicates for PSI calculation in SUPPA2?
19 months ago by
Eric Lim
★ 2.2k
2
votes
1
reply
2.0k
views
Comment:
Comment: how to speed up snakemake workflow
22 months ago by
Eric Lim
★ 2.2k
1
vote
1
reply
1.6k
views
Answer:
Answer: how to specify a specific conda environment in a specific rule with snakemake?
24 months ago by
Eric Lim
★ 2.2k
1
vote
0
replies
878
views
Comment:
Comment: Rule all has wrong order
2.1 years ago by
Eric Lim
★ 2.2k
1
vote
0
replies
3.2k
views
Comment:
Comment: Prepare for a job interview in bioinformatics
2.2 years ago by
Eric Lim
★ 2.2k
1
vote
1
reply
3.2k
views
Comment:
Comment: Big difference in estimated duplicate reads between forward and reverse of paire
2.4 years ago by
Eric Lim
★ 2.2k
0
votes
0
replies
1.1k
views
Job:
Bioinformatics Lead at Stoke Therapeutics, Inc (MA)
rna-splicing
updated 2.4 years ago by
Ram
44k • written 2.6 years ago by
Eric Lim
★ 2.2k
0
votes
1
reply
1.9k
views
Comment:
Comment: Understanding percent spliced in
2.7 years ago by
Eric Lim
★ 2.2k
0
votes
1
reply
1.4k
views
Comment:
Comment: Snakemake error in gatk pipeline
2.8 years ago by
Eric Lim
★ 2.2k
1
vote
0
replies
4.7k
views
Comment:
Comment: Read bam/cram file with IGV from aws s3
2.8 years ago by
Eric Lim
★ 2.2k
3
votes
1
reply
5.0k
views
Answer:
Answer: Is it possible to pass command line arguments to python script in snakemake?
2.8 years ago by
Eric Lim
★ 2.2k
1
vote
0
replies
690
views
Comment:
Comment: What happens to the outputs when you update the rule's conda environment
2.8 years ago by
Eric Lim
★ 2.2k
3
votes
1
reply
1.6k
views
Comment:
Comment: Snakemake issue
2.8 years ago by
Eric Lim
★ 2.2k
0
votes
0
replies
2.4k
views
Answer:
Answer: Snakemake command line arguments
2.8 years ago by
Eric Lim
★ 2.2k
1
vote
1
reply
2.5k
views
Comment:
Comment: snakemake how to get or create wildcards from newly generated files
2.8 years ago by
Eric Lim
★ 2.2k
1
vote
0
replies
2.4k
views
Comment:
Comment: Anyone know any clever snakemake/SLURM tricks to run a big analysis with limited
2.8 years ago by
Eric Lim
★ 2.2k
1
vote
1
reply
2.4k
views
Comment:
Comment: Anyone know any clever snakemake/SLURM tricks to run a big analysis with limited
2.8 years ago by
Eric Lim
★ 2.2k
2
votes
1
reply
2.4k
views
Answer:
Answer: Anyone know any clever snakemake/SLURM tricks to run a big analysis with limited
2.8 years ago by
Eric Lim
★ 2.2k
0
votes
2
replies
3.3k
views
Comment:
Comment: Snakemake Megahit error
3.0 years ago by
Eric Lim
★ 2.2k
0
votes
1
reply
3.3k
views
Comment:
Comment: Snakemake Megahit error
3.0 years ago by
Eric Lim
★ 2.2k
1
vote
0
replies
2.3k
views
Comment:
Comment: Missing Input files Error with snakemake pipeline
3.0 years ago by
Eric Lim
★ 2.2k
1
vote
1
reply
2.3k
views
Comment:
Comment: Missing Input files Error with snakemake pipeline
3.0 years ago by
Eric Lim
★ 2.2k
2
votes
1
reply
2.3k
views
Answer:
Answer: Missing Input files Error with snakemake pipeline
3.0 years ago by
Eric Lim
★ 2.2k
1
vote
0
replies
3.3k
views
Comment:
Comment: Snakemake Megahit error
3.0 years ago by
Eric Lim
★ 2.2k
0
votes
0
replies
735
views
Comment:
Comment: snakemake input wildcards
3.0 years ago by
Eric Lim
★ 2.2k
2
votes
1
reply
4.3k
views
Comment:
Comment: Biopython SeqIO: AttributeError: 'str' object has no attribute 'id'
3.3 years ago by
Eric Lim
★ 2.2k
0
votes
0
replies
1.0k
views
Job:
Bioinformatics internships and co-ops (2021) at Stoke Therapeutics. Remote locations in the US.
internship
co-op
updated 19 months ago by
Ram
44k • written 3.6 years ago by
Eric Lim
★ 2.2k
0
votes
0
replies
2.5k
views
Comment:
C: Bioinformatics Server on AWS
4.7 years ago by
Eric Lim
★ 2.2k
4
votes
1
reply
4.3k
views
Answer:
A: Snakemake: Force execution of rules in a specific order - ignoring wildcards
4.7 years ago by
Eric Lim
★ 2.2k
1
vote
1
reply
2.0k
views
Comment:
C: GSK Data Strategy & Design Expert
4.7 years ago by
Eric Lim
★ 2.2k
8
votes
9
replies
3.2k
views
6 follow
Big difference in estimated duplicate reads between forward and reverse of paired-end RNA-seq
RNA-Seq
duplication
fastqc
updated 2.4 years ago by
rohitsatyam102
▴ 910 • written 5.0 years ago by
Eric Lim
★ 2.2k
0
votes
0
replies
1.1k
views
Comment:
C: Generate list of numbers corresponding to fq reads based on 6-character barcode
4.9 years ago by
Eric Lim
★ 2.2k
1
vote
0
replies
2.7k
views
Comment:
C: how to index different genomes with snakemake with different parameters?
5.0 years ago by
Eric Lim
★ 2.2k
0
votes
0
replies
1.8k
views
Comment:
C: LiftOver from b37
5.0 years ago by
Eric Lim
★ 2.2k
0
votes
0
replies
1.3k
views
Comment:
C: Understanding the annotation tag
5.0 years ago by
Eric Lim
★ 2.2k
2
votes
0
replies
1.1k
views
Answer:
C: Identifying codons from rna-seq data (bed/bam file)
5.0 years ago by
Eric Lim
★ 2.2k
1
vote
1
reply
3.2k
views
Comment:
C: Big difference in estimated duplicate reads between forward and reverse of paire
5.0 years ago by
Eric Lim
★ 2.2k
0
votes
1
reply
3.2k
views
Comment:
C: Big difference in estimated duplicate reads between forward and reverse of paire
5.0 years ago by
Eric Lim
★ 2.2k
0
votes
0
replies
2.0k
views
Job:
Bioinformatics Analyst - Stoke Therapeutics, Inc, Bedford MA, USA
aws
web-application
ngs
updated 17 months ago by
Ram
44k • written 5.0 years ago by
Eric Lim
★ 2.2k
0
votes
0
replies
9.2k
views
Comment:
C: snakemake: pipeline failed with MissingOutputException
5.0 years ago by
Eric Lim
★ 2.2k
233 results • Page
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